RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PDS5AQ29RF7 1337 aaKnown RBP16.44■□□□□ 0.22
HMGB3-204ENST00000448905 PHF20L1A8MW92 1017 aa16.43■□□□□ 0.22
HMGB3-204ENST00000448905 MAP4K4O95819 1239 aaPredicted RBP16.43■□□□□ 0.22
HMGB3-204ENST00000448905 PTPRAP18433 802 aa16.43■□□□□ 0.22
HMGB3-204ENST00000448905 OSBPP22059 807 aa16.43■□□□□ 0.22
HMGB3-204ENST00000448905 MAP3K10Q02779 954 aa16.43■□□□□ 0.22
HMGB3-204ENST00000448905 XAGE2Q96GT9 111 aa16.43■□□□□ 0.22
HMGB3-204ENST00000448905 SLC45A1Q9Y2W3 748 aa16.43■□□□□ 0.22
HMGB3-204ENST00000448905 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 ADORA1P30542 326 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 BTDP43251 543 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 RARSP54136 660 aaKnown RBP16.42■□□□□ 0.22
HMGB3-204ENST00000448905 TFCP2Q12800 502 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 RASGRF1Q13972 1273 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 GADL1Q6ZQY3 521 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 DPF3Q92784 378 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 MEIS3Q99687 375 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 AFG3L2Q9Y4W6 797 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 ZSWIM8A7E2V4 1837 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 GAKO14976 1311 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 MYPNQ86TC9 1320 aa16.42■□□□□ 0.22
HMGB3-204ENST00000448905 A0A0G2JLL6 359 aaPredicted RBP16.41■□□□□ 0.22
HMGB3-204ENST00000448905 CYP2C8P10632 490 aa16.41■□□□□ 0.22
HMGB3-204ENST00000448905 CAPN2P17655 700 aa16.41■□□□□ 0.22
HMGB3-204ENST00000448905 G3BP1Q13283 466 aaKnown RBP eCLIP16.41■□□□□ 0.22
HMGB3-204ENST00000448905 PICALMQ13492 652 aa16.41■□□□□ 0.22
HMGB3-204ENST00000448905 MOGSQ13724 837 aa16.41■□□□□ 0.22
HMGB3-204ENST00000448905 GPAT2Q6NUI2 795 aa16.41■□□□□ 0.22
HMGB3-204ENST00000448905 PRRT2Q7Z6L0 340 aaPredicted RBP16.41■□□□□ 0.22
HMGB3-204ENST00000448905 SMCR8Q8TEV9 937 aaPredicted RBP16.41■□□□□ 0.22
HMGB3-204ENST00000448905 RNF208Q9H0X6 261 aa16.41■□□□□ 0.22
HMGB3-204ENST00000448905 GPR75-ASB3A0A0A6YYF3 556 aa16.4■□□□□ 0.22
HMGB3-204ENST00000448905 TBC1D12O60347 775 aa16.4■□□□□ 0.22
HMGB3-204ENST00000448905 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
HMGB3-204ENST00000448905 GJB1P08034 283 aa16.4■□□□□ 0.22
HMGB3-204ENST00000448905 MECOMQ03112 1051 aa16.4■□□□□ 0.22
HMGB3-204ENST00000448905 SLAIN1Q8ND83 568 aa16.4■□□□□ 0.22
HMGB3-204ENST00000448905 NOL10Q9BSC4 688 aaKnown RBP16.4■□□□□ 0.22
HMGB3-204ENST00000448905 HTATIP2Q9BUP3 242 aa16.4■□□□□ 0.22
HMGB3-204ENST00000448905 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.4■□□□□ 0.22
HMGB3-204ENST00000448905 DDTLA6NHG4 134 aaPredicted RBP16.39■□□□□ 0.21
HMGB3-204ENST00000448905 GNAI2P04899 355 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 BCRP11274 1271 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 CCL5P13501 91 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 GJA8P48165 433 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 MTX1Q13505 466 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 MTFR1Q15390 333 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 SPATA5Q8NB90 893 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 RAI14Q9P0K7 980 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 PNMA3Q9UL41 463 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 KIAA0100Q14667 2235 aaKnown RBP16.39■□□□□ 0.21
HMGB3-204ENST00000448905 MROH7-TTC4A0A0A0MT08 1334 aa16.39■□□□□ 0.21
HMGB3-204ENST00000448905 RBBP6Q7Z6E9 1792 aaKnown RBP16.38■□□□□ 0.21
HMGB3-204ENST00000448905 TRIM75PA6NK02 468 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 UQCRFS1P1P0C7P4 283 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 CTGFP29279 349 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 PRKCZQ05513 592 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 PABPC4Q13310 644 aaKnown RBP eCLIP16.38■□□□□ 0.21
HMGB3-204ENST00000448905 SH3BP5LQ7L8J4 393 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 COA7Q96BR5 231 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 TBC1D2Q9BYX2 928 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 LRP2BPQ9P2M1 347 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 COLQQ9Y215 455 aaPredicted RBP16.38■□□□□ 0.21
HMGB3-204ENST00000448905 ARAP2Q8WZ64 1704 aa16.38■□□□□ 0.21
HMGB3-204ENST00000448905 H0YGN5 161 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 CCER2I3L3R5 266 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 TNPO2O14787 897 aaKnown RBP16.37■□□□□ 0.21
HMGB3-204ENST00000448905 ADCY3O60266 1144 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 BAG3O95817 575 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 PXYLP1Q8TE99 480 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 FRAT1Q92837 279 aaPredicted RBP16.37■□□□□ 0.21
HMGB3-204ENST00000448905 OSBPL5Q9H0X9 879 aaPredicted RBP16.37■□□□□ 0.21
HMGB3-204ENST00000448905 DDX4Q9NQI0 724 aaKnown RBP16.37■□□□□ 0.21
HMGB3-204ENST00000448905 HMG20BQ9P0W2 317 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 NR2E3Q9Y5X4 410 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 BRCA2P51587 3418 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 ADGRA2Q96PE1 1338 aa16.37■□□□□ 0.21
HMGB3-204ENST00000448905 AGTPBP1Q9UPW5 1226 aa16.36■□□□□ 0.21
HMGB3-204ENST00000448905 TFRCP02786 760 aaKnown RBP16.35■□□□□ 0.21
HMGB3-204ENST00000448905 FLT3LGP49771 235 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 RHBDL3P58872 404 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 SPP2Q13103 211 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 IRF5Q13568 498 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 CCDC158Q5M9N0 1113 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 ATF7IPQ6VMQ6 1270 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 PROCA1Q8NCQ7 364 aaPredicted RBP16.35■□□□□ 0.21
HMGB3-204ENST00000448905 ZNF280CQ8ND82 737 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 NSUN4Q96CB9 384 aaKnown RBP16.35■□□□□ 0.21
HMGB3-204ENST00000448905 AS3MTQ9HBK9 375 aa16.35■□□□□ 0.21
HMGB3-204ENST00000448905 SGPL1O95470 568 aa16.34■□□□□ 0.21
HMGB3-204ENST00000448905 PLCG2P16885 1265 aa16.34■□□□□ 0.21
HMGB3-204ENST00000448905 GCLCP48506 637 aaPredicted RBP16.34■□□□□ 0.21
HMGB3-204ENST00000448905 TBC1D9Q6ZT07 1266 aa16.34■□□□□ 0.21
HMGB3-204ENST00000448905 TEX11Q8IYF3 940 aa16.34■□□□□ 0.21
HMGB3-204ENST00000448905 U2AF1L4Q8WU68 220 aaKnown RBP16.34■□□□□ 0.21
HMGB3-204ENST00000448905 DHX36Q9H2U1 1008 aaKnown RBP16.34■□□□□ 0.21
HMGB3-204ENST00000448905 PI4KBQ9UBF8 816 aa16.34■□□□□ 0.21
HMGB3-204ENST00000448905 HERC5Q9UII4 1024 aaKnown RBP16.34■□□□□ 0.21
HMGB3-204ENST00000448905 GABRQQ9UN88 632 aa16.34■□□□□ 0.21
HMGB3-204ENST00000448905 ATRNL1Q5VV63 1379 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms