RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 NOL10Q9BSC4 688 aaKnown RBP8.72□□□□□ -1.01
VPS41-208ENST00000448833 PICK1Q9NRD5 415 aa8.72□□□□□ -1.01
VPS41-208ENST00000448833 PA2G4Q9UQ80 394 aaKnown RBP8.72□□□□□ -1.01
VPS41-208ENST00000448833 BTBD19C9JJ37 291 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 TRIM27P14373 513 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 TFCP2Q12800 502 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 RASGRF1Q13972 1273 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 SLC9C1Q4G0N8 1177 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 CCDC158Q5M9N0 1113 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 PRPF38BQ5VTL8 546 aaKnown RBP8.71□□□□□ -1.02
VPS41-208ENST00000448833 CDAN1Q8IWY9 1227 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 FAM43AQ8N2R8 423 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 ARMC5Q96C12 935 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 GCC1Q96CN9 775 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 TBC1D2Q9BYX2 928 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 GPR108Q9NPR9 543 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 KCNH4Q9UQ05 1017 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 SSUH2Q9Y2M2 353 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 GAKO14976 1311 aa8.71□□□□□ -1.02
VPS41-208ENST00000448833 MGAMO43451 1857 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 HTTP42858 3142 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 GPR75-ASB3A0A0A6YYF3 556 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 TBC1D12O60347 775 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 CTNND1O60716 968 aaKnown RBP8.7□□□□□ -1.02
VPS41-208ENST00000448833 BAG3O95817 575 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 MS4A1P11836 297 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 PLCG2P16885 1265 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 CAPN2P17655 700 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 RGS3P49796 1198 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 LACTBP83111 547 aaPredicted RBP8.7□□□□□ -1.02
VPS41-208ENST00000448833 MAP3K10Q02779 954 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 TMED8Q6PL24 325 aaPredicted RBP8.7□□□□□ -1.02
VPS41-208ENST00000448833 FTSJ3Q8IY81 847 aaKnown RBP8.7□□□□□ -1.02
VPS41-208ENST00000448833 SCYL3Q8IZE3 742 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.7□□□□□ -1.02
VPS41-208ENST00000448833 SPATA5Q8NB90 893 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 LRP2BPQ9P2M1 347 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 FAM198AQ9UFP1 575 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 SLC45A1Q9Y2W3 748 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 MROH7-TTC4A0A0A0MT08 1334 aa8.7□□□□□ -1.02
VPS41-208ENST00000448833 DOCK1Q14185 1865 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 PDHXO00330 501 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 BCAR3O75815 825 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 ARID4AP29374 1257 aaPredicted RBP8.69□□□□□ -1.02
VPS41-208ENST00000448833 ADORA1P30542 326 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 INPP5BP32019 993 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 BTDP43251 543 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 ATP8B2P98198 1209 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 MECOMQ03112 1051 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 NFIAQ12857 509 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 OS9Q13438 667 aaPredicted RBP8.69□□□□□ -1.02
VPS41-208ENST00000448833 CERS3Q8IU89 383 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 PARK7Q99497 189 aaKnown RBP8.69□□□□□ -1.02
VPS41-208ENST00000448833 RAI14Q9P0K7 980 aa8.69□□□□□ -1.02
VPS41-208ENST00000448833 KIAA0100Q14667 2235 aaKnown RBP8.69□□□□□ -1.02
VPS41-208ENST00000448833 PTPRFP10586 1907 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 PHF20L1A8MW92 1017 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 SLC34A2O95436 690 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 PTPRAP18433 802 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 VASPP50552 380 aaPredicted RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 HNRNPUQ00839 825 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS41-208ENST00000448833 PABPC4Q13310 644 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS41-208ENST00000448833 SLC4A8Q2Y0W8 1093 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 C17orf99Q6UX52 265 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 NKX2-3Q8TAU0 364 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 SSH3Q8TE77 659 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 CLUAP1Q96AJ1 413 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 NSUN4Q96CB9 384 aaKnown RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 ZNF333Q96JL9 665 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 ZNF512BQ96KM6 892 aaPredicted RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 OSBPL5Q9H0X9 879 aaPredicted RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 DHX36Q9H2U1 1008 aaKnown RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 CHMP4BQ9H444 224 aaKnown RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 HMG20BQ9P0W2 317 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 HERC5Q9UII4 1024 aaKnown RBP8.68□□□□□ -1.02
VPS41-208ENST00000448833 PNMA3Q9UL41 463 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 ZHX2Q9Y6X8 837 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 ATAD5Q96QE3 1844 aa8.68□□□□□ -1.02
VPS41-208ENST00000448833 A0A0G2JLL6 359 aaPredicted RBP8.67□□□□□ -1.02
VPS41-208ENST00000448833 PNMA6EA0A0J9YXQ4 647 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 SURF6O75683 361 aaKnown RBP8.67□□□□□ -1.02
VPS41-208ENST00000448833 FMNL1O95466 1100 aaPredicted RBP8.67□□□□□ -1.02
VPS41-208ENST00000448833 COL2A1P02458 1487 aaPredicted RBP8.67□□□□□ -1.02
VPS41-208ENST00000448833 PSMC4P43686 418 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 FCGRTP55899 365 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 PICALMQ13492 652 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 HSP90AB4PQ58FF6 505 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 TTC39AQ5SRH9 613 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 ATRNL1Q5VV63 1379 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 NAA16Q6N069 864 aaPredicted RBP8.67□□□□□ -1.02
VPS41-208ENST00000448833 PRRT2Q7Z6L0 340 aaPredicted RBP8.67□□□□□ -1.02
VPS41-208ENST00000448833 ERC1Q8IUD2 1116 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 TMEM57Q8N5G2 664 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 RAET1EQ8TD07 263 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 PHIPQ8WWQ0 1821 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 TRIM47Q96LD4 638 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS41-208ENST00000448833 GINM1Q9NU53 330 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 PCDH10Q9P2E7 1040 aa8.67□□□□□ -1.02
VPS41-208ENST00000448833 PI4KBQ9UBF8 816 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms