RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 USP35Q9P2H5 1018 aa8.53□□□□□ -1.04
USP49-205ENST00000448078 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.53□□□□□ -1.04
USP49-205ENST00000448078 PRAG1Q86YV5 1406 aa8.53□□□□□ -1.04
USP49-205ENST00000448078 DHX57Q6P158 1386 aaKnown RBP8.52□□□□□ -1.05
USP49-205ENST00000448078 ANKRD30BQ9BXX2 1392 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 NRXN3Q9Y4C0 1643 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 FZD6O60353 706 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 CYP2E1P05181 493 aaPredicted RBP8.52□□□□□ -1.05
USP49-205ENST00000448078 AFF1P51825 1210 aaKnown RBP8.52□□□□□ -1.05
USP49-205ENST00000448078 CEP135Q66GS9 1140 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 ALYREFQ86V81 257 aaKnown RBP8.52□□□□□ -1.05
USP49-205ENST00000448078 PMEPA1Q969W9 287 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 MDFIQ99750 246 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 LPIN3Q9BQK8 851 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 IVNS1ABPQ9Y6Y0 642 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 SPATA31A1Q5TZJ5 1347 aa8.52□□□□□ -1.05
USP49-205ENST00000448078 PATL2C9JE40 543 aaKnown RBP8.51□□□□□ -1.05
USP49-205ENST00000448078 NPR3P17342 541 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 HOXB4P17483 251 aaPredicted RBP8.51□□□□□ -1.05
USP49-205ENST00000448078 C20orf204Q6ZNR8 217 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 TCP11L2Q8N4U5 519 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 C1orf127Q8N9H9 656 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 SNX29Q8TEQ0 813 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 LACRTQ9GZZ8 138 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 THRAP3Q9Y2W1 955 aaKnown RBP8.51□□□□□ -1.05
USP49-205ENST00000448078 CDC42BPGQ6DT37 1551 aa8.51□□□□□ -1.05
USP49-205ENST00000448078 MARF1Q9Y4F3 1742 aaKnown RBP8.51□□□□□ -1.05
USP49-205ENST00000448078 EIF3AQ14152 1382 aaKnown RBP8.5□□□□□ -1.05
USP49-205ENST00000448078 PLSCR1O15162 318 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 NEFLP07196 543 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 SPATA31C1P0DKV0 1188 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 CDC25BP30305 580 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 KCNA1Q09470 495 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 SAFB2Q14151 953 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP49-205ENST00000448078 GPR162Q16538 588 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 IL22RA1Q8N6P7 574 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 PRDM6Q9NQX0 595 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 STK32BQ9NY57 414 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 BRWD3Q6RI45 1802 aa8.5□□□□□ -1.05
USP49-205ENST00000448078 NEXMIFQ5QGS0 1516 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 SOWAHDA6NJG2 315 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 COL8A1P27658 744 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 ATP11AP98196 1134 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 MSL1Q68DK7 614 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 PRAM1Q96QH2 718 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 CNTN3Q9P232 1028 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 FOXD3Q9UJU5 478 aaPredicted RBP8.49□□□□□ -1.05
USP49-205ENST00000448078 USP32Q8NFA0 1604 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 ADGRF5Q8IZF2 1346 aa8.49□□□□□ -1.05
USP49-205ENST00000448078 ADGRB2O60241 1585 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 RRBP1Q9P2E9 1410 aaKnown RBP8.48□□□□□ -1.05
USP49-205ENST00000448078 TNFRSF21O75509 655 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 NID1P14543 1247 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 ZC3H6P61129 1189 aaKnown RBP8.48□□□□□ -1.05
USP49-205ENST00000448078 COL13A1Q5TAT6 717 aaPredicted RBP8.48□□□□□ -1.05
USP49-205ENST00000448078 NACC1Q96RE7 527 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 SYT17Q9BSW7 474 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 TRAIPQ9BWF2 469 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 RASSF4Q9H2L5 321 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 C14orf93Q9H972 538 aaKnown RBP8.48□□□□□ -1.05
USP49-205ENST00000448078 TRIM33Q9UPN9 1127 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 RGPD1P0DJD0 1748 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 NWD2Q9ULI1 1742 aa8.48□□□□□ -1.05
USP49-205ENST00000448078 KIF1BO60333 1816 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 ZBTB7AO95365 584 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 EDN3P14138 238 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 MAPK1P28482 360 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 CHRNA2Q15822 529 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 FAM117BQ6P1L5 589 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 XKR5Q6UX68 686 aa8.47□□□□□ -1.05
USP49-205ENST00000448078 KIF1AQ12756 1690 aa8.46□□□□□ -1.05
USP49-205ENST00000448078 TECPR2O15040 1411 aa8.46□□□□□ -1.05
USP49-205ENST00000448078 A0A0A0MRY4 1105 aa8.46□□□□□ -1.06
USP49-205ENST00000448078 CABP4P57796 275 aa8.46□□□□□ -1.06
USP49-205ENST00000448078 PLA2G4EQ3MJ16 856 aa8.46□□□□□ -1.06
USP49-205ENST00000448078 GJD3Q8N144 294 aa8.46□□□□□ -1.06
USP49-205ENST00000448078 PBX4Q9BYU1 374 aa8.46□□□□□ -1.06
USP49-205ENST00000448078 PLEKHH1Q9ULM0 1364 aa8.46□□□□□ -1.06
USP49-205ENST00000448078 YTHDC2Q9H6S0 1430 aaKnown RBP8.46□□□□□ -1.06
USP49-205ENST00000448078 KRBA1A5PL33 1030 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 MSTNO14793 375 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 EREGO14944 169 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 POLR3DP05423 398 aaPredicted RBP8.45□□□□□ -1.06
USP49-205ENST00000448078 HOXD8P13378 290 aaPredicted RBP8.45□□□□□ -1.06
USP49-205ENST00000448078 PTPRAP18433 802 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 CDC27P30260 824 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 ARHGAP4P98171 946 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 GRIK4Q16099 956 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 DDB1Q16531 1140 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 TTC9Q92623 222 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 MTFR1LQ9H019 292 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 GNEQ9Y223 722 aaKnown RBP8.45□□□□□ -1.06
USP49-205ENST00000448078 ANKARQ7Z5J8 1434 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 NRXN1Q9ULB1 1477 aa8.45□□□□□ -1.06
USP49-205ENST00000448078 GRIN3BO60391 1043 aa8.44□□□□□ -1.06
USP49-205ENST00000448078 POLD1P28340 1107 aa8.44□□□□□ -1.06
USP49-205ENST00000448078 GSK3AP49840 483 aa8.44□□□□□ -1.06
USP49-205ENST00000448078 ASAP3Q8TDY4 903 aa8.44□□□□□ -1.06
USP49-205ENST00000448078 OSMRQ99650 979 aa8.44□□□□□ -1.06
USP49-205ENST00000448078 PPME1Q9Y570 386 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms