RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MAP3K10Q02779 954 aa25.52■■□□□ 1.68
SDC1-205ENST00000447124 CD99L2Q8TCZ2 262 aa25.52■■□□□ 1.68
SDC1-205ENST00000447124 EAF2Q96CJ1 260 aaPredicted RBP25.52■■□□□ 1.68
SDC1-205ENST00000447124 RAI14Q9P0K7 980 aa25.52■■□□□ 1.68
SDC1-205ENST00000447124 BTBD19C9JJ37 291 aa25.51■■□□□ 1.67
SDC1-205ENST00000447124 LDHCP07864 332 aa25.51■■□□□ 1.67
SDC1-205ENST00000447124 MLLT1Q03111 559 aaPredicted RBP25.51■■□□□ 1.67
SDC1-205ENST00000447124 SNAPC2Q13487 334 aa25.51■■□□□ 1.67
SDC1-205ENST00000447124 PICALMQ13492 652 aa25.51■■□□□ 1.67
SDC1-205ENST00000447124 TAF1CQ15572 869 aaPredicted RBP25.51■■□□□ 1.67
SDC1-205ENST00000447124 NOL9Q5SY16 702 aaKnown RBP25.51■■□□□ 1.67
SDC1-205ENST00000447124 OTOP1Q7RTM1 612 aa25.51■■□□□ 1.67
SDC1-205ENST00000447124 CCDC8Q9H0W5 538 aaPredicted RBP25.51■■□□□ 1.67
SDC1-205ENST00000447124 TRIM17Q9Y577 477 aa25.51■■□□□ 1.67
SDC1-205ENST00000447124 SP3Q02447 781 aa25.5■■□□□ 1.67
SDC1-205ENST00000447124 CCDC158Q5M9N0 1113 aa25.5■■□□□ 1.67
SDC1-205ENST00000447124 TTC39AQ5SRH9 613 aa25.5■■□□□ 1.67
SDC1-205ENST00000447124 ZFYVE28Q9HCC9 887 aa25.5■■□□□ 1.67
SDC1-205ENST00000447124 TLR7Q9NYK1 1049 aaKnown RBP25.5■■□□□ 1.67
SDC1-205ENST00000447124 LRP2BPQ9P2M1 347 aa25.5■■□□□ 1.67
SDC1-205ENST00000447124 DBNLQ9UJU6 430 aaKnown RBP25.5■■□□□ 1.67
SDC1-205ENST00000447124 CYP2E1P05181 493 aaPredicted RBP25.49■■□□□ 1.67
SDC1-205ENST00000447124 GSTO1P78417 241 aa25.49■■□□□ 1.67
SDC1-205ENST00000447124 ZSCAN29Q8IWY8 852 aaPredicted RBP25.49■■□□□ 1.67
SDC1-205ENST00000447124 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.49■■□□□ 1.67
SDC1-205ENST00000447124 ERO1AQ96HE7 468 aa25.49■■□□□ 1.67
SDC1-205ENST00000447124 ZNF512BQ96KM6 892 aaPredicted RBP25.49■■□□□ 1.67
SDC1-205ENST00000447124 KCNH4Q9UQ05 1017 aa25.49■■□□□ 1.67
SDC1-205ENST00000447124 NPM3O75607 178 aaKnown RBP25.48■■□□□ 1.67
SDC1-205ENST00000447124 MOGSQ13724 837 aa25.48■■□□□ 1.67
SDC1-205ENST00000447124 EXOC6BQ9Y2D4 811 aa25.48■■□□□ 1.67
SDC1-205ENST00000447124 ZAP70P43403 619 aa25.47■■□□□ 1.67
SDC1-205ENST00000447124 PIH1D3Q9NQM4 214 aaKnown RBP25.46■■□□□ 1.67
SDC1-205ENST00000447124 COG6Q9Y2V7 657 aa25.46■■□□□ 1.67
SDC1-205ENST00000447124 MAP4K4O95819 1239 aaPredicted RBP25.45■■□□□ 1.66
SDC1-205ENST00000447124 MS4A1P11836 297 aa25.45■■□□□ 1.66
SDC1-205ENST00000447124 EFCC1Q9HA90 598 aa25.45■■□□□ 1.66
SDC1-205ENST00000447124 ZCCHC17Q9NP64 241 aaKnown RBP25.45■■□□□ 1.66
SDC1-205ENST00000447124 RCAN3Q9UKA8 241 aa25.45■■□□□ 1.66
SDC1-205ENST00000447124 PTPN22Q9Y2R2 807 aa25.45■■□□□ 1.66
SDC1-205ENST00000447124 TLR2O60603 784 aa25.44■■□□□ 1.66
SDC1-205ENST00000447124 NAA16Q6N069 864 aaPredicted RBP25.44■■□□□ 1.66
SDC1-205ENST00000447124 ADGRA1Q86SQ6 560 aa25.44■■□□□ 1.66
SDC1-205ENST00000447124 SIRT2Q8IXJ6 389 aa25.44■■□□□ 1.66
SDC1-205ENST00000447124 SCYL3Q8IZE3 742 aa25.44■■□□□ 1.66
SDC1-205ENST00000447124 SH3RF3Q8TEJ3 882 aaPredicted RBP25.44■■□□□ 1.66
SDC1-205ENST00000447124 ZBTB40Q9NUA8 1239 aa25.44■■□□□ 1.66
SDC1-205ENST00000447124 TBC1D12O60347 775 aa25.43■■□□□ 1.66
SDC1-205ENST00000447124 PTPRAP18433 802 aa25.43■■□□□ 1.66
SDC1-205ENST00000447124 ANKRD23Q86SG2 305 aa25.43■■□□□ 1.66
SDC1-205ENST00000447124 ZHX2Q9Y6X8 837 aa25.43■■□□□ 1.66
SDC1-205ENST00000447124 FAM196BA6NMK8 535 aa25.42■■□□□ 1.66
SDC1-205ENST00000447124 CXCL11O14625 94 aa25.42■■□□□ 1.66
SDC1-205ENST00000447124 PPP4CP60510 307 aa25.42■■□□□ 1.66
SDC1-205ENST00000447124 TEX11Q8IYF3 940 aa25.42■■□□□ 1.66
SDC1-205ENST00000447124 OSBPL5Q9H0X9 879 aaPredicted RBP25.42■■□□□ 1.66
SDC1-205ENST00000447124 AATFQ9NY61 560 aaKnown RBP eCLIP25.42■■□□□ 1.66
SDC1-205ENST00000447124 NDUFB9Q9Y6M9 179 aa25.42■■□□□ 1.66
SDC1-205ENST00000447124 PDHXO00330 501 aa25.41■■□□□ 1.66
SDC1-205ENST00000447124 CTNND1O60716 968 aaKnown RBP25.41■■□□□ 1.66
SDC1-205ENST00000447124 GPAT2Q6NUI2 795 aa25.41■■□□□ 1.66
SDC1-205ENST00000447124 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.41■■□□□ 1.66
SDC1-205ENST00000447124 AFG3L2Q9Y4W6 797 aa25.41■■□□□ 1.66
SDC1-205ENST00000447124 RRP1BQ14684 758 aaKnown RBP25.4■■□□□ 1.66
SDC1-205ENST00000447124 C17orf99Q6UX52 265 aa25.4■■□□□ 1.66
SDC1-205ENST00000447124 AACSQ86V21 672 aa25.4■■□□□ 1.66
SDC1-205ENST00000447124 RPAP2Q8IXW5 612 aaPredicted RBP25.4■■□□□ 1.66
SDC1-205ENST00000447124 RHPN1Q8TCX5 695 aa25.4■■□□□ 1.66
SDC1-205ENST00000447124 ARHGAP39Q9C0H5 1083 aa25.4■■□□□ 1.66
SDC1-205ENST00000447124 IL1RAPL2Q9NP60 686 aa25.4■■□□□ 1.66
SDC1-205ENST00000447124 DDX19BQ9UMR2 479 aa25.4■■□□□ 1.66
SDC1-205ENST00000447124 C20orf194Q5TEA3 1177 aa25.39■■□□□ 1.66
SDC1-205ENST00000447124 CCDC84Q86UT8 332 aaPredicted RBP25.39■■□□□ 1.66
SDC1-205ENST00000447124 ERC1Q8IUD2 1116 aa25.39■■□□□ 1.66
SDC1-205ENST00000447124 ANTXR1Q9H6X2 564 aa25.39■■□□□ 1.66
SDC1-205ENST00000447124 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.39■■□□□ 1.66
SDC1-205ENST00000447124 PICK1Q9NRD5 415 aa25.39■■□□□ 1.66
SDC1-205ENST00000447124 HTTP42858 3142 aa25.39■■□□□ 1.66
SDC1-205ENST00000447124 BAG3O95817 575 aa25.38■■□□□ 1.65
SDC1-205ENST00000447124 CPA4Q9UI42 421 aa25.38■■□□□ 1.65
SDC1-205ENST00000447124 DOCK2Q92608 1830 aa25.37■■□□□ 1.65
SDC1-205ENST00000447124 MYO5AQ9Y4I1 1855 aaKnown RBP25.37■■□□□ 1.65
SDC1-205ENST00000447124 A0A0G2JLL6 359 aaPredicted RBP25.37■■□□□ 1.65
SDC1-205ENST00000447124 DYNLL1P63167 89 aaKnown RBP25.37■■□□□ 1.65
SDC1-205ENST00000447124 PRRT2Q7Z6L0 340 aaPredicted RBP25.37■■□□□ 1.65
SDC1-205ENST00000447124 TGFBRAP1Q8WUH2 860 aa25.37■■□□□ 1.65
SDC1-205ENST00000447124 NOL10Q9BSC4 688 aaKnown RBP25.37■■□□□ 1.65
SDC1-205ENST00000447124 ADGRA2Q96PE1 1338 aa25.37■■□□□ 1.65
SDC1-205ENST00000447124 IGSF3O75054 1194 aa25.36■■□□□ 1.65
SDC1-205ENST00000447124 CTGFP29279 349 aa25.36■■□□□ 1.65
SDC1-205ENST00000447124 HSP90AB4PQ58FF6 505 aa25.36■■□□□ 1.65
SDC1-205ENST00000447124 MAPKAPK5Q8IW41 473 aa25.36■■□□□ 1.65
SDC1-205ENST00000447124 APBB1O00213 710 aa25.35■■□□□ 1.65
SDC1-205ENST00000447124 CYP7A1P22680 504 aa25.35■■□□□ 1.65
SDC1-205ENST00000447124 LACTBP83111 547 aaPredicted RBP25.35■■□□□ 1.65
SDC1-205ENST00000447124 COL2A1P02458 1487 aaPredicted RBP25.34■■□□□ 1.65
SDC1-205ENST00000447124 IDH1O75874 414 aaKnown RBP25.34■■□□□ 1.65
SDC1-205ENST00000447124 CYP2C8P10632 490 aa25.34■■□□□ 1.65
SDC1-205ENST00000447124 PLCG2P16885 1265 aa25.34■■□□□ 1.65
SDC1-205ENST00000447124 ARMC5Q96C12 935 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms