RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 TRIM32Q13049 653 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 DDX42Q86XP3 938 aaKnown RBP eCLIP8.04□□□□□ -1.12
MCF2-206ENST00000446225 ANKRD24Q8TF21 1146 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 FERD3LQ96RJ6 166 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 MPHOSPH6Q99547 160 aaKnown RBP8.04□□□□□ -1.12
MCF2-206ENST00000446225 APBA2Q99767 749 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 AKAP2Q9Y2D5 859 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 PIK3R4Q99570 1358 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 NRXN1Q9ULB1 1477 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 PIK3C2GO75747 1445 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 STRCP1A6NGW2 1772 aa8.04□□□□□ -1.12
MCF2-206ENST00000446225 ALKQ9UM73 1620 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 ALG1L2C9J202 215 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 STAT3P40763 770 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 SKOR1P84550 965 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 PPP2R5AQ15172 486 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 CT47A1Q5JQC4 288 aaPredicted RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 NBPF10Q6P3W6 841 aaKnown RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 FAM196AQ6ZSG2 479 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 SPATC1Q76KD6 591 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 SV2BQ7L1I2 683 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 EHBP1Q8NDI1 1231 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 RHPN1Q8TCX5 695 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 OXCT2Q9BYC2 517 aaPredicted RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 RTCBQ9Y3I0 505 aaKnown RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 MYOM2P54296 1465 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 LRRC7Q96NW7 1537 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 KRT18P05783 430 aaKnown RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 MYCLP1P12525 358 aaPredicted RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 LMNB2Q03252 620 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 THNSL2Q86YJ6 484 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 C1orf127Q8N9H9 656 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 NAP1L5Q96NT1 182 aaPredicted RBP8.03□□□□□ -1.12
MCF2-206ENST00000446225 KCNMB2Q9Y691 235 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 TMEM94Q12767 1356 aa8.03□□□□□ -1.12
MCF2-206ENST00000446225 CPS1P31327 1500 aa8.02□□□□□ -1.12
MCF2-206ENST00000446225 GJB6O95452 261 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 MCM4P33991 863 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 ARSDP51689 593 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 SSRP1Q08945 709 aaKnown RBP8.02□□□□□ -1.13
MCF2-206ENST00000446225 HDAC1Q13547 482 aaPredicted RBP8.02□□□□□ -1.13
MCF2-206ENST00000446225 SAFB2Q14151 953 aaKnown RBP eCLIP8.02□□□□□ -1.13
MCF2-206ENST00000446225 ZFYVE27Q5T4F4 411 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 C11orf96Q7Z7L8 435 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 ZNF516Q92618 1163 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 MFSD3Q96ES6 412 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 TNKS2Q9H2K2 1166 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 MCM8Q9UJA3 840 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 IFT172Q9UG01 1749 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 DIP2AQ14689 1571 aa8.02□□□□□ -1.13
MCF2-206ENST00000446225 TONSLQ96HA7 1378 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 PMLP29590 882 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 NBPF1Q3BBV0 1214 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 NBPF8Q3BBV2 869 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 FOXD4L6Q3SYB3 417 aaPredicted RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 TM4SF20Q53R12 229 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 KIAA0319Q5VV43 1072 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 IER5Q5VY09 327 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 TMEM214Q6NUQ4 689 aaKnown RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 FOXD4L3Q6VB84 417 aaPredicted RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 TPTE2Q6XPS3 522 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 ZNF280CQ8ND82 737 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 SUSD3Q96L08 255 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 ZSCAN10Q96SZ4 725 aaPredicted RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 MAF1Q9H063 256 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 PGPEP1Q9NXJ5 209 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 LRPPRCP42704 1394 aaKnown RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 ROBO2Q9HCK4 1378 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 TLR3O15455 904 aaKnown RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 INPP5BP32019 993 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 NFKB2Q00653 900 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 LONRF3Q496Y0 759 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 AXDND1Q5T1B0 1012 aaPredicted RBP8.01□□□□□ -1.13
MCF2-206ENST00000446225 DTHD1Q6ZMT9 781 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 WAPLQ7Z5K2 1190 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 NIM1KQ8IY84 436 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 HSH2DQ96JZ2 352 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 CAAP1Q9H8G2 361 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 PNMA2Q9UL42 364 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 TLL2Q9Y6L7 1015 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 CLSPNQ9HAW4 1339 aa8.01□□□□□ -1.13
MCF2-206ENST00000446225 POTEB3A0JP26 581 aa8□□□□□ -1.13
MCF2-206ENST00000446225 DDAH1O94760 285 aa8□□□□□ -1.13
MCF2-206ENST00000446225 LDHAP00338 332 aaKnown RBP8□□□□□ -1.13
MCF2-206ENST00000446225 CELA3AP09093 270 aa8□□□□□ -1.13
MCF2-206ENST00000446225 LRRC41Q15345 812 aa8□□□□□ -1.13
MCF2-206ENST00000446225 SYCP2LQ5T4T6 812 aa8□□□□□ -1.13
MCF2-206ENST00000446225 POTEBQ6S5H4 581 aa8□□□□□ -1.13
MCF2-206ENST00000446225 OR6P1Q8NGX9 317 aa8□□□□□ -1.13
MCF2-206ENST00000446225 IL17RAQ96F46 866 aa8□□□□□ -1.13
MCF2-206ENST00000446225 LATS2Q9NRM7 1088 aa8□□□□□ -1.13
MCF2-206ENST00000446225 ABI2Q9NYB9 513 aaPredicted RBP8□□□□□ -1.13
MCF2-206ENST00000446225 CHD2O14647 1828 aaKnown RBP8□□□□□ -1.13
MCF2-206ENST00000446225 PRAG1Q86YV5 1406 aa8□□□□□ -1.13
MCF2-206ENST00000446225 ABCC11Q96J66 1382 aa8□□□□□ -1.13
MCF2-206ENST00000446225 A0A1W2PP55 124 aa7.99□□□□□ -1.13
MCF2-206ENST00000446225 CCDC189A1A4V9 331 aa7.99□□□□□ -1.13
MCF2-206ENST00000446225 IRS4O14654 1257 aaPredicted RBP7.99□□□□□ -1.13
MCF2-206ENST00000446225 ADH1AP07327 375 aa7.99□□□□□ -1.13
MCF2-206ENST00000446225 CES1P23141 567 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms