RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 FAM151AQ8WW52 585 aa18.88■□□□□ 0.61
USP40-206ENST00000443711 DDX4Q9NQI0 724 aaKnown RBP18.88■□□□□ 0.61
USP40-206ENST00000443711 FAM198AQ9UFP1 575 aa18.88■□□□□ 0.61
USP40-206ENST00000443711 FLT1P17948 1338 aa18.87■□□□□ 0.61
USP40-206ENST00000443711 VPS53Q5VIR6 699 aa18.87■□□□□ 0.61
USP40-206ENST00000443711 IFNL3Q8IZI9 196 aa18.87■□□□□ 0.61
USP40-206ENST00000443711 DSCC1Q9BVC3 393 aa18.87■□□□□ 0.61
USP40-206ENST00000443711 DCP1AQ9NPI6 582 aaPredicted RBP18.87■□□□□ 0.61
USP40-206ENST00000443711 BAZ2AQ9UIF9 1905 aaKnown RBP18.86■□□□□ 0.61
USP40-206ENST00000443711 REC8O95072 547 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 POTEIP0CG38 1075 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 POTEJP0CG39 1038 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 TCP10Q12799 353 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 RASA3Q14644 834 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 ALX1Q15699 326 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 C8orf34Q49A92 452 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 SULF1Q8IWU6 871 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 OSBPL5Q9H0X9 879 aaPredicted RBP18.86■□□□□ 0.61
USP40-206ENST00000443711 DEFB129Q9H1M3 183 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 ANO2Q9NQ90 1003 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 MCM9Q9NXL9 1143 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 MKRN1Q9UHC7 482 aaKnown RBP18.86■□□□□ 0.61
USP40-206ENST00000443711 NAV1Q8NEY1 1877 aa18.86■□□□□ 0.61
USP40-206ENST00000443711 CNTNAP1P78357 1384 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 TDO2P48775 406 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 CDC37L1Q7L3B6 337 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 KRT26Q7Z3Y9 468 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 ZSCAN29Q8IWY8 852 aaPredicted RBP18.85■□□□□ 0.61
USP40-206ENST00000443711 AMOTL1Q8IY63 956 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 ZNF784Q8NCA9 323 aaPredicted RBP18.85■□□□□ 0.61
USP40-206ENST00000443711 NAPBQ9H115 298 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 EPB41L4AQ9HCS5 686 aaPredicted RBP18.85■□□□□ 0.61
USP40-206ENST00000443711 PPP2R3BQ9Y5P8 575 aa18.85■□□□□ 0.61
USP40-206ENST00000443711 KIF3CO14782 793 aa18.84■□□□□ 0.61
USP40-206ENST00000443711 FOXP2O15409 715 aa18.84■□□□□ 0.61
USP40-206ENST00000443711 PTH1RQ03431 593 aa18.84■□□□□ 0.61
USP40-206ENST00000443711 ZFPM1Q8IX07 1006 aa18.84■□□□□ 0.61
USP40-206ENST00000443711 MAP4K1Q92918 833 aa18.84■□□□□ 0.61
USP40-206ENST00000443711 LSG1Q9H089 658 aaKnown RBP18.84■□□□□ 0.61
USP40-206ENST00000443711 DHX36Q9H2U1 1008 aaKnown RBP18.84■□□□□ 0.61
USP40-206ENST00000443711 SAP30BPQ9UHR5 308 aaKnown RBP18.84■□□□□ 0.61
USP40-206ENST00000443711 CTNNA3Q9UI47 895 aa18.84■□□□□ 0.61
USP40-206ENST00000443711 SCAF8Q9UPN6 1271 aaKnown RBP18.84■□□□□ 0.61
USP40-206ENST00000443711 COL2A1P02458 1487 aaPredicted RBP18.84■□□□□ 0.61
USP40-206ENST00000443711 USP17L12C9JPN9 530 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 USP17L21D6R901 530 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 FGAP02671 866 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 POLR3DP05423 398 aaPredicted RBP18.83■□□□□ 0.6
USP40-206ENST00000443711 SBK1Q52WX2 424 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 CHADLQ6NUI6 762 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 TTC6Q86TZ1 520 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 USP48Q86UV5 1035 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 TMEM39BQ9GZU3 492 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 ARPP21Q9UBL0 812 aaPredicted RBP18.83■□□□□ 0.6
USP40-206ENST00000443711 PALD1Q9ULE6 856 aa18.83■□□□□ 0.6
USP40-206ENST00000443711 U3KPZ7 1027 aaPredicted RBP18.83■□□□□ 0.6
USP40-206ENST00000443711 ZMYM6O95789 1325 aa18.82■□□□□ 0.6
USP40-206ENST00000443711 MAP1SQ66K74 1059 aaPredicted RBP18.82■□□□□ 0.6
USP40-206ENST00000443711 CTR9Q6PD62 1173 aa18.82■□□□□ 0.6
USP40-206ENST00000443711 ATRNL1Q5VV63 1379 aa18.81■□□□□ 0.6
USP40-206ENST00000443711 DDTLA6NHG4 134 aaPredicted RBP18.81■□□□□ 0.6
USP40-206ENST00000443711 EPB41L2O43491 1005 aaKnown RBP18.81■□□□□ 0.6
USP40-206ENST00000443711 HLA-DOAP06340 250 aa18.81■□□□□ 0.6
USP40-206ENST00000443711 SH3BP5LQ7L8J4 393 aa18.81■□□□□ 0.6
USP40-206ENST00000443711 HOOK2Q96ED9 719 aa18.81■□□□□ 0.6
USP40-206ENST00000443711 TEPSINQ96N21 525 aa18.81■□□□□ 0.6
USP40-206ENST00000443711 GLIS2Q9BZE0 524 aaPredicted RBP18.81■□□□□ 0.6
USP40-206ENST00000443711 PI4KBQ9UBF8 816 aa18.81■□□□□ 0.6
USP40-206ENST00000443711 DDX60LQ5H9U9 1706 aaKnown RBP18.8■□□□□ 0.6
USP40-206ENST00000443711 MINDY4BA8MYZ0 360 aa18.8■□□□□ 0.6
USP40-206ENST00000443711 ADM5C9JUS6 153 aa18.8■□□□□ 0.6
USP40-206ENST00000443711 SUPT20HL1Q3ZLR7 823 aa18.8■□□□□ 0.6
USP40-206ENST00000443711 C12orf60Q5U649 245 aa18.8■□□□□ 0.6
USP40-206ENST00000443711 FOXP4Q8IVH2 680 aaPredicted RBP18.8■□□□□ 0.6
USP40-206ENST00000443711 CSRNP1Q96S65 589 aa18.8■□□□□ 0.6
USP40-206ENST00000443711 RBM8AQ9Y5S9 174 aaKnown RBP18.8■□□□□ 0.6
USP40-206ENST00000443711 CYP2D6P10635 497 aa18.79■□□□□ 0.6
USP40-206ENST00000443711 LAMB1P07942 1786 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 CYP2D7A0A087X1C5 515 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 ZNF213O14771 459 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 TOMM70O94826 608 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 SEC24BO95487 1268 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 SLC3A2P08195 630 aaKnown RBP18.78■□□□□ 0.6
USP40-206ENST00000443711 PLCD1P51178 756 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 IMMTQ16891 758 aaKnown RBP18.78■□□□□ 0.6
USP40-206ENST00000443711 SLC4A8Q2Y0W8 1093 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 NBPF12Q5TAG4 269 aaPredicted RBP18.78■□□□□ 0.6
USP40-206ENST00000443711 PRAMEF18Q5VWM3 479 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 SMC1BQ8NDV3 1235 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 RBM46Q8TBY0 533 aaKnown RBP18.78■□□□□ 0.6
USP40-206ENST00000443711 CDCA5Q96FF9 252 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 USP26Q9BXU7 913 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 BACH2Q9BYV9 841 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 EHD4Q9H223 541 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 ANAPC4Q9UJX5 808 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 TAOK2Q9UL54 1235 aa18.78■□□□□ 0.6
USP40-206ENST00000443711 NF2P35240 595 aa18.77■□□□□ 0.6
USP40-206ENST00000443711 PPARAQ07869 468 aa18.77■□□□□ 0.6
USP40-206ENST00000443711 CDAN1Q8IWY9 1227 aa18.77■□□□□ 0.6
USP40-206ENST00000443711 CRACR2BQ8N4Y2 399 aaPredicted RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms