RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 SPC24Q8NBT2 197 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 HPS5Q9UPZ3 1129 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 COL1A1P02452 1464 aaPredicted RBP16.46■□□□□ 0.23
LIMD1-202ENST00000440097 WDR19Q8NEZ3 1342 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 SH2B2O14492 632 aaPredicted RBP16.46■□□□□ 0.23
LIMD1-202ENST00000440097 SERPINB2P05120 415 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 GYS1P13807 737 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 GRAPQ13588 217 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 SLC27A3Q5K4L6 730 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 GRAPLQ8TC17 118 aaPredicted RBP16.46■□□□□ 0.23
LIMD1-202ENST00000440097 ANKRD7Q92527 254 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 C8orf76Q96K31 380 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 TMEM87BQ96K49 555 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 FUCA2Q9BTY2 467 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 MYL10Q9BUA6 226 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 KRT23Q9C075 422 aa16.46■□□□□ 0.23
LIMD1-202ENST00000440097 CCDC69A6NI79 296 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 OTUD7BQ6GQQ9 843 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 BICD2Q8TD16 824 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 SENP2Q9HC62 589 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 CFAP45Q9UL16 551 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 CASZ1Q86V15 1759 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 ERICH2A1L162 156 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 ADD1P35611 737 aaKnown RBP16.45■□□□□ 0.22
LIMD1-202ENST00000440097 SART3Q15020 963 aaKnown RBP16.45■□□□□ 0.22
LIMD1-202ENST00000440097 CPLX2Q6PUV4 134 aaKnown RBP16.45■□□□□ 0.22
LIMD1-202ENST00000440097 SYNE3Q6ZMZ3 975 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 LEO1Q8WVC0 666 aaPredicted RBP16.45■□□□□ 0.22
LIMD1-202ENST00000440097 DOCK2Q92608 1830 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 ZMYM6O95789 1325 aa16.45■□□□□ 0.22
LIMD1-202ENST00000440097 SEMA3EO15041 775 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 ZBTB43O43298 467 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 FDPSP14324 419 aaKnown RBP16.44■□□□□ 0.22
LIMD1-202ENST00000440097 PRDX5P30044 214 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 APOA5Q6Q788 366 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 SLC12A7Q9Y666 1083 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 SALL1Q9NSC2 1324 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 C4AP0C0L4 1744 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 MECOMQ03112 1051 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 PPARAQ07869 468 aa16.44■□□□□ 0.22
LIMD1-202ENST00000440097 DZIP1Q86YF9 867 aaKnown RBP16.44■□□□□ 0.22
LIMD1-202ENST00000440097 GPR101Q96P66 508 aaPredicted RBP16.44■□□□□ 0.22
LIMD1-202ENST00000440097 RNF41Q9H4P4 317 aaPredicted RBP16.44■□□□□ 0.22
LIMD1-202ENST00000440097 AATFQ9NY61 560 aaKnown RBP eCLIP16.44■□□□□ 0.22
LIMD1-202ENST00000440097 COL24A1Q17RW2 1714 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 GOLGA8AA7E2F4 631 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 IGSF3O75054 1194 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 TXNRD1Q16881 649 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 POTEAQ6S8J7 498 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 FTOQ9C0B1 505 aaKnown RBP eCLIP16.43■□□□□ 0.22
LIMD1-202ENST00000440097 GJB4Q9NTQ9 266 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 IGDCC4Q8TDY8 1250 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 PHKBQ93100 1093 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 UBAC1Q9BSL1 405 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 LY9Q9HBG7 655 aa16.43■□□□□ 0.22
LIMD1-202ENST00000440097 ELP1O95163 1332 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 CYP2D7A0A087X1C5 515 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 CTIFO43310 598 aaKnown RBP16.42■□□□□ 0.22
LIMD1-202ENST00000440097 CDKL5O76039 1030 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 CAMK4Q16566 473 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 STAG1Q8WVM7 1258 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 NSUN4Q96CB9 384 aaKnown RBP16.42■□□□□ 0.22
LIMD1-202ENST00000440097 RIOK1Q9BRS2 568 aaKnown RBP16.42■□□□□ 0.22
LIMD1-202ENST00000440097 POLR3DP05423 398 aaPredicted RBP16.42■□□□□ 0.22
LIMD1-202ENST00000440097 TPM3P06753 285 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 WTAPQ15007 396 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 TACC3Q9Y6A5 838 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 XDHP47989 1333 aa16.42■□□□□ 0.22
LIMD1-202ENST00000440097 LIG1P18858 919 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 SLC4A8Q2Y0W8 1093 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 ZNF396Q96N95 335 aaPredicted RBP16.41■□□□□ 0.22
LIMD1-202ENST00000440097 TNRC6CQ9HCJ0 1690 aaKnown RBP16.41■□□□□ 0.22
LIMD1-202ENST00000440097 SMIM22K7EJ46 135 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 PRDM1O75626 825 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 GNL2Q13823 731 aaKnown RBP16.41■□□□□ 0.22
LIMD1-202ENST00000440097 CCDC82Q8N4S0 544 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 ZNF384Q8TF68 577 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 NUP133Q8WUM0 1156 aa16.41■□□□□ 0.22
LIMD1-202ENST00000440097 RANBP6O60518 1105 aaKnown RBP16.4■□□□□ 0.22
LIMD1-202ENST00000440097 UFL1O94874 794 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 CDC27P30260 824 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 ESR2Q92731 530 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 DACT1Q9NYF0 836 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 LEMD3Q9Y2U8 911 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 A0A1B0GUL6 1792 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 GOLGA6L6A8MZA4 724 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 IARSP41252 1262 aaKnown RBP16.4■□□□□ 0.22
LIMD1-202ENST00000440097 ZNF804AQ7Z570 1209 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 RBM17Q96I25 401 aaKnown RBP16.4■□□□□ 0.22
LIMD1-202ENST00000440097 USP28Q96RU2 1077 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 ALG1Q9BT22 464 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 CRNKL1Q9BZJ0 848 aaKnown RBP16.4■□□□□ 0.22
LIMD1-202ENST00000440097 NUP62CLQ9H1M0 184 aa16.4■□□□□ 0.22
LIMD1-202ENST00000440097 APBA3O96018 575 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 LIFRP42702 1097 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 FBXO18Q8NFZ0 1043 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 AIFM3Q96NN9 605 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 RGS17Q9UGC6 210 aaPredicted RBP16.39■□□□□ 0.21
LIMD1-202ENST00000440097 USP17L12C9JPN9 530 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 USP17L21D6R901 530 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms