RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 FLT1P17948 1338 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 DDX60LQ5H9U9 1706 aaKnown RBP15.12■□□□□ 0.01
SCLT1-202ENST00000439369 TNNI2P48788 182 aa15.12■□□□□ 0.01
SCLT1-202ENST00000439369 NECTIN1Q15223 517 aa15.12■□□□□ 0.01
SCLT1-202ENST00000439369 NBPF9Q3BBW0 867 aa15.12■□□□□ 0.01
SCLT1-202ENST00000439369 TRPM4Q8TD43 1214 aa15.12■□□□□ 0.01
SCLT1-202ENST00000439369 SDR42E1Q8WUS8 393 aa15.12■□□□□ 0.01
SCLT1-202ENST00000439369 TAF1DQ9H5J8 278 aaPredicted RBP15.12■□□□□ 0.01
SCLT1-202ENST00000439369 PCDHAC2Q9Y5I4 1007 aa15.12■□□□□ 0.01
SCLT1-202ENST00000439369 GOLGB1Q14789 3259 aaKnown RBP15.12■□□□□ 0.01
SCLT1-202ENST00000439369 ATRNL1Q5VV63 1379 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 EGFRP00533 1210 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 VEGFAP15692 232 aaPredicted RBP15.11■□□□□ 0.01
SCLT1-202ENST00000439369 HSPA4P34932 840 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 NT5C2P49902 561 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 ANAPC15P60006 121 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 IMMTQ16891 758 aaKnown RBP15.11■□□□□ 0.01
SCLT1-202ENST00000439369 RBM26Q5T8P6 1007 aaKnown RBP15.11■□□□□ 0.01
SCLT1-202ENST00000439369 FAM151AQ8WW52 585 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 KCNB2Q92953 911 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 IL17RAQ96F46 866 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 OSBPL5Q9H0X9 879 aaPredicted RBP15.11■□□□□ 0.01
SCLT1-202ENST00000439369 FAM198AQ9UFP1 575 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 PGAP2Q9UHJ9 254 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 ANAPC4Q9UJX5 808 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 PPP2R3BQ9Y5P8 575 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 CDK5RAP2Q96SN8 1893 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 ROBO3Q96MS0 1386 aa15.11■□□□□ 0.01
SCLT1-202ENST00000439369 NAV1Q8NEY1 1877 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 POTECB2RU33 542 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 PCP11498 1178 aaKnown RBP15.1■□□□□ 0.01
SCLT1-202ENST00000439369 ZKSCAN1P17029 563 aaPredicted RBP15.1■□□□□ 0.01
SCLT1-202ENST00000439369 RBM25P49756 843 aaKnown RBP15.1■□□□□ 0.01
SCLT1-202ENST00000439369 HIRAP54198 1017 aaPredicted RBP15.1■□□□□ 0.01
SCLT1-202ENST00000439369 TSGA10IPQ3SY00 556 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 TTC6Q86TZ1 520 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 MAPKAPK5Q8IW41 473 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 IL27Q8NEV9 243 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 DDX4Q9NQI0 724 aaKnown RBP15.1■□□□□ 0.01
SCLT1-202ENST00000439369 MCM9Q9NXL9 1143 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 LAMA4Q16363 1823 aa15.1■□□□□ 0.01
SCLT1-202ENST00000439369 CLRN2A0PK11 232 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 USP17L12C9JPN9 530 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 USP17L21D6R901 530 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 ZNF213O14771 459 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 SLC3A2P08195 630 aaKnown RBP15.09■□□□□ 0.01
SCLT1-202ENST00000439369 NFIAQ12857 509 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 KRT32Q14532 448 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 C12orf60Q5U649 245 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 CREB3L3Q68CJ9 461 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 CTR9Q6PD62 1173 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 TBC1D32Q96NH3 1257 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 C22orf23Q9BZE7 217 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 EHD4Q9H223 541 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 CNTNAP1P78357 1384 aa15.09■□□□□ 0.01
SCLT1-202ENST00000439369 SLC27A2O14975 620 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 HLA-DOAP06340 250 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 PICALMQ13492 652 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 ANGEL2Q5VTE6 544 aaKnown RBP15.08■□□□□ 0
SCLT1-202ENST00000439369 HOOK2Q96ED9 719 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 RNF41Q9H4P4 317 aaPredicted RBP15.08■□□□□ 0
SCLT1-202ENST00000439369 VEZTQ9HBM0 779 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 GGA3Q9NZ52 723 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 LAMB1P07942 1786 aa15.08■□□□□ 0
SCLT1-202ENST00000439369 TCP10L2B9ZVM9 353 aa15.07■□□□□ 0
SCLT1-202ENST00000439369 POLR3DP05423 398 aaPredicted RBP15.07■□□□□ 0
SCLT1-202ENST00000439369 CYP21A2P08686 494 aa15.07■□□□□ 0
SCLT1-202ENST00000439369 CACNB3P54284 484 aa15.07■□□□□ 0
SCLT1-202ENST00000439369 PPARAQ07869 468 aa15.07■□□□□ 0
SCLT1-202ENST00000439369 METTL16Q86W50 562 aaKnown RBP15.07■□□□□ 0
SCLT1-202ENST00000439369 DCPSQ96C86 337 aaKnown RBP15.07■□□□□ 0
SCLT1-202ENST00000439369 ZNF287Q9HBT7 754 aa15.07■□□□□ 0
SCLT1-202ENST00000439369 PI4KBQ9UBF8 816 aa15.07■□□□□ 0
SCLT1-202ENST00000439369 TCP10Q12799 353 aa15.06■□□□□ 0
SCLT1-202ENST00000439369 RASA3Q14644 834 aa15.06■□□□□ 0
SCLT1-202ENST00000439369 FOXP4Q8IVH2 680 aaPredicted RBP15.06■□□□□ 0
SCLT1-202ENST00000439369 STAG1Q8WVM7 1258 aa15.06■□□□□ 0
SCLT1-202ENST00000439369 CNNM2Q9H8M5 875 aa15.06■□□□□ 0
SCLT1-202ENST00000439369 SWAP70Q9UH65 585 aa15.06■□□□□ 0
SCLT1-202ENST00000439369 PALD1Q9ULE6 856 aa15.06■□□□□ 0
SCLT1-202ENST00000439369 MYH1P12882 1939 aa15.05■□□□□ 0
SCLT1-202ENST00000439369 MINDY4BA8MYZ0 360 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 FGRP09769 529 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 AKNAD1Q5T1N1 836 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 LDHDQ86WU2 507 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 SULF1Q8IWU6 871 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 ZSCAN29Q8IWY8 852 aaPredicted RBP15.05■□□□□ -0
SCLT1-202ENST00000439369 TM6SF1Q9BZW5 370 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 DEFB129Q9H1M3 183 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 RRAGCQ9HB90 399 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 SAP30BPQ9UHR5 308 aaKnown RBP15.05■□□□□ -0
SCLT1-202ENST00000439369 HERC5Q9UII4 1024 aaKnown RBP15.05■□□□□ -0
SCLT1-202ENST00000439369 SNX14Q9Y5W7 946 aa15.05■□□□□ -0
SCLT1-202ENST00000439369 ASTN2O75129 1339 aaPredicted RBP15.05■□□□□ -0
SCLT1-202ENST00000439369 BAZ2AQ9UIF9 1905 aaKnown RBP15.04■□□□□ -0
SCLT1-202ENST00000439369 ORC4O43929 436 aa15.04■□□□□ -0
SCLT1-202ENST00000439369 TBC1D12O60347 775 aa15.04■□□□□ -0
SCLT1-202ENST00000439369 HMGB1P09429 215 aaKnown RBP15.04■□□□□ -0
SCLT1-202ENST00000439369 PSMA5P28066 241 aa15.04■□□□□ -0
SCLT1-202ENST00000439369 PLCD1P51178 756 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms