RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 KRT77Q7Z794 578 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 HOOK3Q86VS8 718 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 SLC7A5P1Q8MH63 180 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 NDUFAF2Q8N183 169 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 TTC39CQ8N584 583 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 ZBTB8BQ8NAP8 495 aaPredicted RBP7.36□□□□□ -1.23
MCF2-205ENST00000437564 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.36□□□□□ -1.23
MCF2-205ENST00000437564 BHMT2Q9H2M3 363 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 KCND1Q9NSA2 647 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 TFIP11Q9UBB9 837 aaKnown RBP7.36□□□□□ -1.23
MCF2-205ENST00000437564 TRPC6Q9Y210 931 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 PRELID1Q9Y255 219 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 SSX2IPQ9Y2D8 614 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 PLEKHH2Q8IVE3 1493 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 POTEFA5A3E0 1075 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 HIP1RO75146 1068 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 PARP1P09874 1014 aaKnown RBP7.35□□□□□ -1.23
MCF2-205ENST00000437564 ALOX15P16050 662 aaPredicted RBP7.35□□□□□ -1.23
MCF2-205ENST00000437564 CASTP20810 708 aaKnown RBP7.35□□□□□ -1.23
MCF2-205ENST00000437564 SCNN1BP51168 640 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 INHBCP55103 352 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 MUM1Q2TAK8 710 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CCDC144BQ3MJ40 725 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CEP85LQ5SZL2 805 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CREB3L3Q68CJ9 461 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 BICDL1Q6ZP65 573 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CCDC144CPQ8IYA2 1237 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 MAP3K14Q99558 947 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 TSC22D3Q99576 134 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 TNMDQ9H2S6 317 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 KCNF1Q9H3M0 494 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 L2HGDHQ9H9P8 463 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 ZNF304Q9HCX3 659 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CIDEBQ9UHD4 219 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CARD8Q9Y2G2 431 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 NCOA1Q15788 1441 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 B4DLN1 442 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 EBAG9O00559 213 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 ST18O60284 1047 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 MGEA5O60502 916 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 NEMFO60524 1076 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CLASP2O75122 1294 aaKnown RBP7.35□□□□□ -1.23
MCF2-205ENST00000437564 VAMP4O75379 141 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 LIG3P49916 1009 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 ZBTB17Q13105 803 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 BIRC3Q13489 604 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 MAP7Q14244 749 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 HIC1Q14526 733 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 DDB1Q16531 1140 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CCDC158Q5M9N0 1113 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 NBPF14Q5TI25 921 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 TMX3Q96JJ7 454 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 C16orf45Q96MC5 204 aaPredicted RBP7.35□□□□□ -1.23
MCF2-205ENST00000437564 MUC3BQ9H195 1237 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 DCAF16Q9NXF7 216 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 KIAA1468Q9P260 1216 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 LUC7L2Q9Y383 392 aaKnown RBP7.35□□□□□ -1.23
MCF2-205ENST00000437564 ATAD2Q6PL18 1390 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CCNB3Q8WWL7 1395 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 RAB3GAP2Q9H2M9 1393 aa7.35□□□□□ -1.23
MCF2-205ENST00000437564 CHL1O00533 1208 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 CYP27B1O15528 508 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 SART1O43290 800 aaKnown RBP7.34□□□□□ -1.23
MCF2-205ENST00000437564 SRGAP3O43295 1099 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 TCF3P15923 654 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 CCT6AP40227 531 aaKnown RBP7.34□□□□□ -1.23
MCF2-205ENST00000437564 ARHGAP25P42331 645 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 AMPHP49418 695 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 CLCN2P51788 898 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 SMTNP53814 917 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 TTLL12Q14166 644 aaPredicted RBP7.34□□□□□ -1.23
MCF2-205ENST00000437564 TPD52L1Q16890 204 aaPredicted RBP7.34□□□□□ -1.23
MCF2-205ENST00000437564 MAP7D1Q3KQU3 841 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 MCTP1Q6DN14 999 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 NANOGNBQ7Z5D8 188 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 ACMSDQ8TDX5 336 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 FRS2Q8WU20 508 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 RNPC3Q96LT9 517 aaKnown RBP7.34□□□□□ -1.23
MCF2-205ENST00000437564 C2orf49Q9BVC5 232 aaPredicted RBP7.34□□□□□ -1.23
MCF2-205ENST00000437564 HELLSQ9NRZ9 838 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 GABBR1Q9UBS5 961 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 KLF15Q9UIH9 416 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 TMCO1Q9UM00 188 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 TONSLQ96HA7 1378 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 KIF15Q9NS87 1388 aa7.34□□□□□ -1.23
MCF2-205ENST00000437564 POLR1AO95602 1720 aaPredicted RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 SGTAO43765 313 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 SMNDC1O75940 238 aaKnown RBP eCLIP7.33□□□□□ -1.24
MCF2-205ENST00000437564 TMCC1O94876 653 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 TBC1D8O95759 1140 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 CCDC166P0CW27 439 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 S100A5P33763 92 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 MAN1A1P33908 653 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 FNTAP49354 379 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 IFFO1Q0D2I5 559 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 PTPN14Q15678 1187 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 ALDH1L2Q3SY69 923 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 VPS53Q5VIR6 699 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 NUTM2DQ5VT03 806 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms