RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PICALMQ13492 652 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 LDLRAD1Q5T700 205 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 DCAF15Q66K64 600 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 RASAL3Q86YV0 1011 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 CDAN1Q8IWY9 1227 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 ANKRD13AQ8IZ07 590 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 MAGEB6Q8N7X4 407 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 BEGAINQ9BUH8 593 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 AK9Q5TCS8 1911 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 MYO5AQ9Y4I1 1855 aaKnown RBP13.91□□□□□ -0.18
COL28A1-203ENST00000435823 DOCK2Q92608 1830 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 FAM155AB1AL88 458 aaPredicted RBP13.9□□□□□ -0.18
COL28A1-203ENST00000435823 WDHD1O75717 1129 aaPredicted RBP13.9□□□□□ -0.18
COL28A1-203ENST00000435823 RHBDL3P58872 404 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 ANKRD45Q5TZF3 282 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 CERS3Q8IU89 383 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 ZSCAN29Q8IWY8 852 aaPredicted RBP13.9□□□□□ -0.18
COL28A1-203ENST00000435823 TEX11Q8IYF3 940 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 SLC10A4Q96EP9 437 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 HAUS7Q99871 368 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 PAG1Q9NWQ8 432 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 AATFQ9NY61 560 aaKnown RBP eCLIP13.9□□□□□ -0.18
COL28A1-203ENST00000435823 RFX7Q2KHR2 1363 aa13.9□□□□□ -0.18
COL28A1-203ENST00000435823 PPP4CP60510 307 aa13.89□□□□□ -0.19
COL28A1-203ENST00000435823 IRX6P78412 446 aaPredicted RBP13.89□□□□□ -0.19
COL28A1-203ENST00000435823 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL28A1-203ENST00000435823 WBP1LQ9NX94 342 aa13.89□□□□□ -0.19
COL28A1-203ENST00000435823 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.89□□□□□ -0.19
COL28A1-203ENST00000435823 CSADQ9Y600 493 aa13.89□□□□□ -0.19
COL28A1-203ENST00000435823 ERC2O15083 957 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 MAP3K9P80192 1104 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 KIF23Q02241 960 aaPredicted RBP13.88□□□□□ -0.19
COL28A1-203ENST00000435823 SLC9C2Q5TAH2 1124 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 ADGRA1Q86SQ6 560 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 ZFPM1Q8IX07 1006 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.88□□□□□ -0.19
COL28A1-203ENST00000435823 SH3RF3Q8TEJ3 882 aaPredicted RBP13.88□□□□□ -0.19
COL28A1-203ENST00000435823 CSRNP1Q96S65 589 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 ZNF341Q9BYN7 854 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 DDX4Q9NQI0 724 aaKnown RBP13.88□□□□□ -0.19
COL28A1-203ENST00000435823 TTC41PQ6P2S7 1318 aa13.88□□□□□ -0.19
COL28A1-203ENST00000435823 PDE6AP16499 860 aa13.87□□□□□ -0.19
COL28A1-203ENST00000435823 MIGA2Q7L4E1 593 aa13.87□□□□□ -0.19
COL28A1-203ENST00000435823 MIGA1Q8NAN2 632 aa13.87□□□□□ -0.19
COL28A1-203ENST00000435823 EDC3Q96F86 508 aaKnown RBP13.87□□□□□ -0.19
COL28A1-203ENST00000435823 WRNIP1Q96S55 665 aa13.87□□□□□ -0.19
COL28A1-203ENST00000435823 OSBPL5Q9H0X9 879 aaPredicted RBP13.87□□□□□ -0.19
COL28A1-203ENST00000435823 FOXD4L1Q9NU39 408 aa13.87□□□□□ -0.19
COL28A1-203ENST00000435823 OTOFQ9HC10 1997 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 MAGEB6P1A0A0J9YX57 407 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 CA12O43570 354 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 ZBTB48P10074 688 aaPredicted RBP13.86□□□□□ -0.19
COL28A1-203ENST00000435823 MX1P20591 662 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 MKRN3Q13064 507 aaKnown RBP13.86□□□□□ -0.19
COL28A1-203ENST00000435823 SPRYD7Q5W111 196 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 ZSCAN25Q6NSZ9 544 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 SMC5Q8IY18 1101 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 TGFBRAP1Q8WUH2 860 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 CLMNQ96JQ2 1002 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 ZIC5Q96T25 663 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 ELP3Q9H9T3 547 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 ZNF532Q9HCE3 1301 aa13.86□□□□□ -0.19
COL28A1-203ENST00000435823 COL2A1P02458 1487 aaPredicted RBP13.86□□□□□ -0.19
COL28A1-203ENST00000435823 ATRNL1Q5VV63 1379 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 DDTLA6NHG4 134 aaPredicted RBP13.85□□□□□ -0.19
COL28A1-203ENST00000435823 FOXN1O15353 648 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 GLRX3O76003 335 aaKnown RBP13.85□□□□□ -0.19
COL28A1-203ENST00000435823 IGHDP01880 384 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 USP5P45974 858 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 CTCFP49711 727 aaPredicted RBP13.85□□□□□ -0.19
COL28A1-203ENST00000435823 DYNLL1P63167 89 aaKnown RBP13.85□□□□□ -0.19
COL28A1-203ENST00000435823 SREBF2Q12772 1141 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 VGLL4Q14135 290 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 TSHZ3Q63HK5 1081 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.85□□□□□ -0.19
COL28A1-203ENST00000435823 SH3BP5LQ7L8J4 393 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 MAPKAPK5Q8IW41 473 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 WNK4Q96J92 1243 aa13.85□□□□□ -0.19
COL28A1-203ENST00000435823 DHX36Q9H2U1 1008 aaKnown RBP13.85□□□□□ -0.19
COL28A1-203ENST00000435823 ADD2P35612 726 aa13.84□□□□□ -0.19
COL28A1-203ENST00000435823 B4GALNT3Q6L9W6 998 aa13.84□□□□□ -0.19
COL28A1-203ENST00000435823 OTUD7AQ8TE49 926 aaPredicted RBP13.84□□□□□ -0.19
COL28A1-203ENST00000435823 ZKSCAN4Q969J2 545 aaPredicted RBP13.84□□□□□ -0.19
COL28A1-203ENST00000435823 OPTNQ96CV9 577 aa13.84□□□□□ -0.19
COL28A1-203ENST00000435823 FLT1P17948 1338 aa13.84□□□□□ -0.19
COL28A1-203ENST00000435823 FOCADQ5VW36 1801 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 TCRBV5S4A2TA0A5A2 114 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 MANSC4A6NHS7 340 aaPredicted RBP13.83□□□□□ -0.2
COL28A1-203ENST00000435823 HLA-DOAP06340 250 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 UBE3CQ15386 1083 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 LRRFIP1Q32MZ4 808 aaKnown RBP13.83□□□□□ -0.2
COL28A1-203ENST00000435823 KBTBD3Q8NAB2 608 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 RIOK1Q9BRS2 568 aaKnown RBP13.83□□□□□ -0.2
COL28A1-203ENST00000435823 CRNKL1Q9BZJ0 848 aaKnown RBP13.83□□□□□ -0.2
COL28A1-203ENST00000435823 LNPKQ9C0E8 428 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL28A1-203ENST00000435823 PI4KBQ9UBF8 816 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 ZNF112Q9UJU3 913 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 MYH7P12883 1935 aa13.83□□□□□ -0.2
COL28A1-203ENST00000435823 CDK5RAP2Q96SN8 1893 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms