RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RAPGEF3O95398 923 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 ARNTP27540 789 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 CASP7P55210 303 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 AP3B2Q13367 1082 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 RASGRF1Q13972 1273 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 LLGL2Q6P1M3 1020 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 TRIM47Q96LD4 638 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 HHIPQ96QV1 700 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 FERD3LQ96RJ6 166 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 POP1Q99575 1024 aaKnown RBP5.8□□□□□ -1.48
HMGB3-203ENST00000430118 MUC3BQ9H195 1237 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 SOX17Q9H6I2 414 aaPredicted RBP5.8□□□□□ -1.48
HMGB3-203ENST00000430118 EHMT1Q9H9B1 1298 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 ACTR10Q9NZ32 417 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 PRR12Q9ULL5 1215 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 PTPRTO14522 1441 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 ADARB2-AS1A8MUL3 147 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 SMAD7O15105 426 aaKnown RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 TRPA1O75762 1119 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 TRIM37O94972 964 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 ATE1O95260 518 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 EIF2AK2P19525 551 aaKnown RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 IBSPP21815 317 aaPredicted RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 ATP11AP98196 1134 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 RPL6Q02878 288 aaKnown RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 ZNF252P-AS1Q0IIN9 211 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 DDR2Q16832 855 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 TAF7LQ5H9L4 462 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 CEP135Q66GS9 1140 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 BNC2Q6ZN30 1099 aaPredicted RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 SULF2Q8IWU5 870 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 KCNB2Q92953 911 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 ZNF669Q96BR6 464 aaPredicted RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 RNPC3Q96LT9 517 aaKnown RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 UBE2OQ9C0C9 1292 aaKnown RBP5.79□□□□□ -1.48
HMGB3-203ENST00000430118 FHOD3Q2V2M9 1422 aa5.79□□□□□ -1.48
HMGB3-203ENST00000430118 J3QW42 95 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 TERTO14746 1132 aaKnown RBP5.78□□□□□ -1.48
HMGB3-203ENST00000430118 CABP4P57796 275 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 IFRD2Q12894 506 aaPredicted RBP5.78□□□□□ -1.48
HMGB3-203ENST00000430118 FXNQ16595 210 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 PTPROQ16827 1216 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 LRRFIP1Q32MZ4 808 aaKnown RBP5.78□□□□□ -1.48
HMGB3-203ENST00000430118 ARSHQ5FYA8 562 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 RICTORQ6R327 1708 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 VN1R5Q7Z5H4 357 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 RAB44Q7Z6P3 723 aaPredicted RBP5.78□□□□□ -1.48
HMGB3-203ENST00000430118 SYT9Q86SS6 491 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 MICALL1Q8N3F8 863 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 WNT8BQ93098 351 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 GTPBP3Q969Y2 492 aaKnown RBP5.78□□□□□ -1.48
HMGB3-203ENST00000430118 GAL3ST3Q96A11 431 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 PLD4Q96BZ4 506 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 CACNA2D2Q9NY47 1150 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 PPT2Q9UMR5 302 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 TACC3Q9Y6A5 838 aa5.78□□□□□ -1.48
HMGB3-203ENST00000430118 C9orf84Q5VXU9 1444 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 MEIS3P2A8K0S8 358 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 WIPF1O43516 503 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 ARAFP10398 606 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 ESRRAP11474 423 aaPredicted RBP5.77□□□□□ -1.49
HMGB3-203ENST00000430118 MCM4P33991 863 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 ZNF423Q2M1K9 1284 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 TAB3Q8N5C8 712 aaPredicted RBP5.77□□□□□ -1.49
HMGB3-203ENST00000430118 NANOS1Q8WY41 292 aaKnown RBP5.77□□□□□ -1.49
HMGB3-203ENST00000430118 MDFIQ99750 246 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 SLKQ9H2G2 1235 aaPredicted RBP5.77□□□□□ -1.49
HMGB3-203ENST00000430118 BRMS1Q9HCU9 246 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 SLC6A14Q9UN76 642 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 PCDHB5Q9Y5E4 795 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 SLC12A7Q9Y666 1083 aa5.77□□□□□ -1.49
HMGB3-203ENST00000430118 PRR36Q9H6K5 1346 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 ARHGEF12Q9NZN5 1544 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 TLR3O15455 904 aaKnown RBP5.76□□□□□ -1.49
HMGB3-203ENST00000430118 PDPK1O15530 556 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 INSM1Q01101 510 aaPredicted RBP5.76□□□□□ -1.49
HMGB3-203ENST00000430118 MLLT1Q03111 559 aaPredicted RBP5.76□□□□□ -1.49
HMGB3-203ENST00000430118 ELMSAN1Q6PJG2 1045 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 CCDC81Q6ZN84 652 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 PDZD3Q86UT5 571 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 FAM35AQ86V20 835 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 LSRQ86X29 649 aaPredicted RBP5.76□□□□□ -1.49
HMGB3-203ENST00000430118 HOMER1Q86YM7 354 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 SYNPOQ8N3V7 929 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 FAM169BQ8N8A8 192 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 JMYQ8N9B5 988 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 FBXO27Q8NI29 283 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 APPBP2Q92624 585 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 TM9SF2Q99805 663 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 KRT82Q9NSB4 513 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 MAPK8IP1Q9UQF2 711 aa5.76□□□□□ -1.49
HMGB3-203ENST00000430118 MED1Q15648 1581 aaPredicted RBP5.76□□□□□ -1.49
HMGB3-203ENST00000430118 hCG_2014768A0A024R1R8 64 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 FAM221BA6H8Z2 402 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 H3BRJ5 948 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 CDC45O75419 566 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 BMP4P12644 408 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 ADH6P28332 368 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 IGBP1P78318 339 aa5.75□□□□□ -1.49
HMGB3-203ENST00000430118 CTBSQ01459 385 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms