RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 YTHDC1Q96MU7 727 aaKnown RBP11.6□□□□□ -0.55
TRIM39-208ENST00000428555 PIH1D3Q9NQM4 214 aaKnown RBP11.6□□□□□ -0.55
TRIM39-208ENST00000428555 ZNF112Q9UJU3 913 aa11.6□□□□□ -0.55
TRIM39-208ENST00000428555 SNCAIPQ9Y6H5 919 aa11.6□□□□□ -0.55
TRIM39-208ENST00000428555 SPDYE5A6NIY4 337 aa11.59□□□□□ -0.55
TRIM39-208ENST00000428555 GTF2A2P52657 109 aa11.59□□□□□ -0.55
TRIM39-208ENST00000428555 OTUD7BQ6GQQ9 843 aa11.59□□□□□ -0.55
TRIM39-208ENST00000428555 NAA16Q6N069 864 aaPredicted RBP11.59□□□□□ -0.55
TRIM39-208ENST00000428555 ERO1BQ86YB8 467 aa11.59□□□□□ -0.55
TRIM39-208ENST00000428555 BRI3BPQ8WY22 251 aa11.59□□□□□ -0.55
TRIM39-208ENST00000428555 NDUFB9Q9Y6M9 179 aa11.59□□□□□ -0.55
TRIM39-208ENST00000428555 CCL15-CCL14A0A0B4J2E2 113 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 CCDC85CA6NKD9 419 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 PHF20L1A8MW92 1017 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 IRF6O14896 467 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 RAB11FIP3O75154 756 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 MAP3K10Q02779 954 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 CCL15Q16663 113 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 SH3RF3Q8TEJ3 882 aaPredicted RBP11.58□□□□□ -0.56
TRIM39-208ENST00000428555 KIF1BPQ96EK5 621 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 CFHR5Q9BXR6 569 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 ANTXR1Q9H6X2 564 aa11.58□□□□□ -0.56
TRIM39-208ENST00000428555 RPAP1Q9BWH6 1393 aaPredicted RBP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 FKTNO75072 461 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 MAP4K4O95819 1239 aaPredicted RBP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 CYP7A1P22680 504 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 PPP4CP60510 307 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 PPATQ06203 517 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 CRHR2Q13324 411 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 NOM1Q5C9Z4 860 aaKnown RBP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 CTU1Q7Z7A3 348 aaKnown RBP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 ADGRA1Q86SQ6 560 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 TEX11Q8IYF3 940 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 CLASRPQ8N2M8 674 aaKnown RBP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 NOL10Q9BSC4 688 aaKnown RBP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 AATFQ9NY61 560 aaKnown RBP eCLIP11.57□□□□□ -0.56
TRIM39-208ENST00000428555 CASP8AP2Q9UKL3 1982 aa11.57□□□□□ -0.56
TRIM39-208ENST00000428555 NPM3O75607 178 aaKnown RBP11.56□□□□□ -0.56
TRIM39-208ENST00000428555 IDH1O75874 414 aaKnown RBP11.56□□□□□ -0.56
TRIM39-208ENST00000428555 BAG3O95817 575 aa11.56□□□□□ -0.56
TRIM39-208ENST00000428555 IFIT2P09913 472 aaKnown RBP11.56□□□□□ -0.56
TRIM39-208ENST00000428555 CETPP11597 493 aa11.56□□□□□ -0.56
TRIM39-208ENST00000428555 DYNLL1P63167 89 aaKnown RBP11.56□□□□□ -0.56
TRIM39-208ENST00000428555 PPIL2Q13356 520 aa11.56□□□□□ -0.56
TRIM39-208ENST00000428555 SNAPC2Q13487 334 aa11.56□□□□□ -0.56
TRIM39-208ENST00000428555 FAM43AQ8N2R8 423 aa11.56□□□□□ -0.56
TRIM39-208ENST00000428555 ARAP2Q8WZ64 1704 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 FAM196BA6NMK8 535 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 BTBD19C9JJ37 291 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 PPP4R3CPQ6ZMV5 832 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 MAGEB6Q8N7X4 407 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 MIGA1Q8NAN2 632 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 TGFBRAP1Q8WUH2 860 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 OSBPL5Q9H0X9 879 aaPredicted RBP11.55□□□□□ -0.56
TRIM39-208ENST00000428555 ZHX2Q9Y6X8 837 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 ECM29Q5VYK3 1845 aa11.55□□□□□ -0.56
TRIM39-208ENST00000428555 RFX7Q2KHR2 1363 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 ATRNL1Q5VV63 1379 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 SMARCA5O60264 1052 aaPredicted RBP11.54□□□□□ -0.56
TRIM39-208ENST00000428555 TBC1D12O60347 775 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 CTNND1O60716 968 aaKnown RBP11.54□□□□□ -0.56
TRIM39-208ENST00000428555 IGSF3O75054 1194 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 PLCG2P16885 1265 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 MAP3K12Q12852 859 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 TAF1CQ15572 869 aaPredicted RBP11.54□□□□□ -0.56
TRIM39-208ENST00000428555 NOL9Q5SY16 702 aaKnown RBP11.54□□□□□ -0.56
TRIM39-208ENST00000428555 MAPKAPK5Q8IW41 473 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 SCYL3Q8IZE3 742 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.54□□□□□ -0.56
TRIM39-208ENST00000428555 ZFYVE28Q9HCC9 887 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 KCNH4Q9UQ05 1017 aa11.54□□□□□ -0.56
TRIM39-208ENST00000428555 CXCL11O14625 94 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 PTPRAP18433 802 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 RRP1P56182 461 aaKnown RBP11.53□□□□□ -0.56
TRIM39-208ENST00000428555 SP3Q02447 781 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 RRP1BQ14684 758 aaKnown RBP11.53□□□□□ -0.56
TRIM39-208ENST00000428555 EDC3Q96F86 508 aaKnown RBP11.53□□□□□ -0.56
TRIM39-208ENST00000428555 DNAJC2Q99543 621 aaKnown RBP11.53□□□□□ -0.56
TRIM39-208ENST00000428555 LRRCC1Q9C099 1032 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 BOLA2Q9H3K6 86 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 DCTPP1Q9H773 170 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 PICK1Q9NRD5 415 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.53□□□□□ -0.56
TRIM39-208ENST00000428555 PCDHB15Q9Y5E8 787 aa11.53□□□□□ -0.56
TRIM39-208ENST00000428555 GOLIM4O00461 696 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 MOGSQ13724 837 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 TTF1Q15361 905 aaPredicted RBP11.52□□□□□ -0.57
TRIM39-208ENST00000428555 PKN2Q16513 984 aaKnown RBP11.52□□□□□ -0.57
TRIM39-208ENST00000428555 SLC9C2Q5TAH2 1124 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 CCDC84Q86UT8 332 aaPredicted RBP11.52□□□□□ -0.57
TRIM39-208ENST00000428555 CD99L2Q8TCZ2 262 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.52□□□□□ -0.57
TRIM39-208ENST00000428555 PI4KBQ9UBF8 816 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 SAP30BPQ9UHR5 308 aaKnown RBP11.52□□□□□ -0.57
TRIM39-208ENST00000428555 PALD1Q9ULE6 856 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 AFG3L2Q9Y4W6 797 aa11.52□□□□□ -0.57
TRIM39-208ENST00000428555 AKAP11Q9UKA4 1901 aa11.51□□□□□ -0.57
TRIM39-208ENST00000428555 PDHXO00330 501 aa11.51□□□□□ -0.57
TRIM39-208ENST00000428555 ATP5JP18859 108 aa11.51□□□□□ -0.57
TRIM39-208ENST00000428555 CAP1Q01518 475 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms