RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 PCDHGC5Q9Y5F6 944 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 DCDC2CA8MYV0 355 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 GAS2O43903 313 aaKnown RBP6.73□□□□□ -1.33
USP40-204ENST00000427947 BPNT1O95861 308 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 CDK8P49336 464 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 INPP5AQ14642 412 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 WIPI1Q5MNZ9 446 aaPredicted RBP6.73□□□□□ -1.33
USP40-204ENST00000427947 DYMQ7RTS9 669 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 CCDC84Q86UT8 332 aaPredicted RBP6.73□□□□□ -1.33
USP40-204ENST00000427947 GATAD2BQ8WXI9 593 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 ELMO3Q96BJ8 720 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 PLPPR2Q96GM1 343 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 KCNQ5Q9NR82 932 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 CSADQ9Y600 493 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 SYNGAP1Q96PV0 1343 aa6.73□□□□□ -1.33
USP40-204ENST00000427947 PRAMEF27A3QJZ7 478 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 TLR3O15455 904 aaKnown RBP6.72□□□□□ -1.33
USP40-204ENST00000427947 CILPO75339 1184 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 GATA4P43694 442 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 ZC3H12AQ5D1E8 599 aaKnown RBP6.72□□□□□ -1.33
USP40-204ENST00000427947 LRFN4Q6PJG9 635 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 FAM196AQ6ZSG2 479 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 HDXQ7Z353 690 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 C12orf40Q86WS4 652 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 UBP1Q9NZI7 540 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 CRIM1Q9NZV1 1036 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 ACTL7BQ9Y614 415 aa6.72□□□□□ -1.33
USP40-204ENST00000427947 FAM221AA4D161 298 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 GREM1O60565 184 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 ITGB2P05107 769 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 RANGAP1P46060 587 aaPredicted RBP6.71□□□□□ -1.34
USP40-204ENST00000427947 TNNI2P48788 182 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 RPL6Q02878 288 aaKnown RBP6.71□□□□□ -1.34
USP40-204ENST00000427947 PAK2Q13177 524 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 PPM1JQ5JR12 505 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 DZIP1LQ8IYY4 767 aaKnown RBP6.71□□□□□ -1.34
USP40-204ENST00000427947 C2CD4AQ8NCU7 369 aaPredicted RBP6.71□□□□□ -1.34
USP40-204ENST00000427947 FBXO27Q8NI29 283 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 UTP4Q969X6 686 aaKnown RBP6.71□□□□□ -1.34
USP40-204ENST00000427947 FANCD2OSQ96PS1 177 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 PICK1Q9NRD5 415 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 INPP5FQ9Y2H2 1132 aa6.71□□□□□ -1.34
USP40-204ENST00000427947 RAB6AP20340 208 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 ASPAP45381 313 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 CRKP46108 304 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 ERVK-24P63145 666 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 APOBRQ0VD83 1088 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 MPP2Q14168 576 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 UVSSAQ2YD98 709 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.7□□□□□ -1.34
USP40-204ENST00000427947 FAM46AQ96IP4 442 aaKnown RBP6.7□□□□□ -1.34
USP40-204ENST00000427947 EAF1Q96JC9 268 aaPredicted RBP6.7□□□□□ -1.34
USP40-204ENST00000427947 NT5C1AQ9BXI3 368 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 ATXN3LQ9H3M9 355 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 PIDD1Q9HB75 910 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 FAM105AQ9NUU6 356 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 HIF3AQ9Y2N7 669 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 SNCAIPQ9Y6H5 919 aa6.7□□□□□ -1.34
USP40-204ENST00000427947 HCLS1P14317 486 aaPredicted RBP6.69□□□□□ -1.34
USP40-204ENST00000427947 USP11P51784 963 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 TTLL4Q14679 1199 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 CWF19L2Q2TBE0 894 aaKnown RBP6.69□□□□□ -1.34
USP40-204ENST00000427947 SEZ6Q53EL9 994 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 REC114Q7Z4M0 266 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 TP53INP1Q96A56 240 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 GPRASP2Q96D09 838 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 MYRFLQ96LU7 910 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 SSBP4Q9BWG4 385 aaPredicted RBP6.69□□□□□ -1.34
USP40-204ENST00000427947 CAPN10Q9HC96 672 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 DISC1Q9NRI5 854 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 ROBO2Q9HCK4 1378 aa6.69□□□□□ -1.34
USP40-204ENST00000427947 GFRA2O00451 464 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 GRIN3BO60391 1043 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 RNGTTO60942 597 aaKnown RBP6.68□□□□□ -1.34
USP40-204ENST00000427947 BMP3P12645 472 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 RXRBP28702 533 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 ZC3H6P61129 1189 aaKnown RBP6.68□□□□□ -1.34
USP40-204ENST00000427947 SGO2Q562F6 1265 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 CYFIP1Q7L576 1253 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 ARMC10Q8N2F6 343 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 NKD1Q969G9 470 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 LRRC3Q9BY71 257 aa6.68□□□□□ -1.34
USP40-204ENST00000427947 GSX1Q9H4S2 264 aaPredicted RBP6.68□□□□□ -1.34
USP40-204ENST00000427947 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.67□□□□□ -1.34
USP40-204ENST00000427947 DHX15O43143 795 aaKnown RBP6.67□□□□□ -1.34
USP40-204ENST00000427947 MCM4P33991 863 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 GJA8P48165 433 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 ETF1P62495 437 aaKnown RBP6.67□□□□□ -1.34
USP40-204ENST00000427947 RING1Q06587 406 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 GNL2Q13823 731 aaKnown RBP6.67□□□□□ -1.34
USP40-204ENST00000427947 ZBTB37Q5TC79 503 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 CDPF1Q6NVV7 123 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 RNF214Q8ND24 703 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 FBLIM1Q8WUP2 373 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 TINF2Q9BSI4 451 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 YIPF2Q9BWQ6 316 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 KCNF1Q9H3M0 494 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 BRMS1Q9HCU9 246 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 TPSG1Q9NRR2 321 aa6.67□□□□□ -1.34
USP40-204ENST00000427947 FANCGO15287 622 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms