RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 HSD3B7Q9H2F3 369 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 KCNH3Q9ULD8 1083 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 PPP2R2CQ9Y2T4 447 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 WDR17Q8IZU2 1322 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 URI1O94763 535 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-207ENST00000422797 TUBBP07437 444 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 UQCRFS1P1P0C7P4 283 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 ERCC5P28715 1186 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-207ENST00000422797 CYP2C19P33261 490 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 ADD2P35612 726 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 TCIRG1Q13488 830 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 NKX1-1Q15270 411 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-207ENST00000422797 RILPL1Q5EBL4 403 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 SPECC1LQ69YQ0 1117 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 OTUD7BQ6GQQ9 843 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 APOA5Q6Q788 366 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 MSL3Q8N5Y2 521 aaKnown RBP12.63□□□□□ -0.39
LIMS1-207ENST00000422797 FBXW7Q969H0 707 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 BAG1Q99933 345 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-207ENST00000422797 PARP3Q9Y6F1 533 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 TIAM2Q8IVF5 1701 aa12.63□□□□□ -0.39
LIMS1-207ENST00000422797 A0A087WWV3 80 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 CCDC196A0A1B0GTZ2 297 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 GOLGA8AA7E2F4 631 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 SEMA3EO15041 775 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 BMP15O95972 392 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 CSF1RP07333 972 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 HAND2P61296 217 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 MAP3K9P80192 1104 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 SSRP1Q08945 709 aaKnown RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 IFIT5Q13325 482 aaKnown RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 GOLGA1Q92805 767 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 ERCC4Q92889 916 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 PANX2Q96RD6 677 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 FOXP1Q9H334 677 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 CCDC9Q9Y3X0 531 aaKnown RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 FMNL1O95466 1100 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 ATP1A3P13637 1013 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 IFNAR1P17181 557 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 ZAP70P43403 619 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 BRD3Q15059 726 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 PPP2R5BQ15173 497 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 HSP90AB3PQ58FF7 597 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 TTLL7Q6ZT98 887 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 METTL16Q86W50 562 aaKnown RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 PROSER2Q86WR7 435 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 TMEM139Q8IV31 216 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 NOSTRINQ8IVI9 506 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 TRIM22Q8IYM9 498 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 SMARCE1Q969G3 411 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 CCDC51Q96ER9 411 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 CTAGE1Q96RT6 745 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 UTP14AQ9BVJ6 771 aaKnown RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 KRT23Q9C075 422 aa12.62□□□□□ -0.39
LIMS1-207ENST00000422797 GPHNQ9NQX3 736 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-207ENST00000422797 LRP6O75581 1613 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 RIC1Q4ADV7 1423 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 A0A0G2JLW4 131 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 VWA3AA6NCI4 1184 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 ZNF18P17022 549 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 PTPREP23469 700 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 MARCKSP29966 332 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 PNOCQ13519 176 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 SART3Q15020 963 aaKnown RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 POSTNQ15063 836 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 KIF6Q6ZMV9 814 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 NFXL1Q6ZNB6 911 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 TMTC2Q8N394 836 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 ZBTB38Q8NAP3 1195 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 ZNF594Q96JF6 807 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 UBXN6Q9BZV1 441 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 PUS7LQ9H0K6 701 aaKnown RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 ARFGAP3Q9NP61 516 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 IQSEC3Q9UPP2 1182 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-207ENST00000422797 PCDHA5Q9Y5H7 936 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 MRFAP1Q9Y605 127 aa12.61□□□□□ -0.39
LIMS1-207ENST00000422797 CCDC151A5D8V7 595 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 CCDC175P0C221 793 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 GNAT2P19087 354 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 CDK11BP21127 795 aaKnown RBP12.6□□□□□ -0.39
LIMS1-207ENST00000422797 PIP4K2AP48426 406 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-207ENST00000422797 PLCD1P51178 756 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 GNG11P61952 73 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 MDM2Q00987 491 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-207ENST00000422797 PPP2R3AQ06190 1150 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 MORC3Q14149 939 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 NTRK3Q16288 839 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 RSRC2Q7L4I2 434 aaKnown RBP12.6□□□□□ -0.39
LIMS1-207ENST00000422797 CEP112Q8N8E3 955 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 ZCRB1Q8TBF4 217 aaKnown RBP12.6□□□□□ -0.39
LIMS1-207ENST00000422797 AK7Q96M32 723 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 PYM1Q9BRP8 204 aaKnown RBP12.6□□□□□ -0.39
LIMS1-207ENST00000422797 CARD6Q9BX69 1037 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 FANCLQ9NW38 375 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 RAI14Q9P0K7 980 aa12.6□□□□□ -0.39
LIMS1-207ENST00000422797 ERLIN1O75477 346 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 MMP1P03956 469 aa12.59□□□□□ -0.39
LIMS1-207ENST00000422797 ATF3P18847 181 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms