RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TBC1D2Q9BYX2 928 aa20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 CNNM2Q9H8M5 875 aa20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 TOMM22Q9NS69 142 aa20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 TMOD2Q9NZR1 351 aa20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 ZBTB12Q9Y330 459 aaPredicted RBP20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 GJA3Q9Y6H8 435 aa20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 TAF6LQ9Y6J9 622 aa20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 K7ELQ4 463 aaPredicted RBP20.27■□□□□ 0.84
CCDC28B-202ENST00000421922 POLR3DP05423 398 aaPredicted RBP20.27■□□□□ 0.84
CCDC28B-202ENST00000421922 USP17L8P0C7I0 530 aa20.27■□□□□ 0.84
CCDC28B-202ENST00000421922 RPS6KB1P23443 525 aa20.27■□□□□ 0.84
CCDC28B-202ENST00000421922 CFAP100Q494V2 611 aa20.27■□□□□ 0.84
CCDC28B-202ENST00000421922 MFSD6Q6ZSS7 791 aa20.27■□□□□ 0.84
CCDC28B-202ENST00000421922 USP17L12C9JPN9 530 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 USP17L21D6R901 530 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 FZD9O00144 591 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 HSP90AA1P07900 732 aaKnown RBP20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 MMP14P50281 582 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 RHBDL3P58872 404 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 CTDSPL2Q05D32 466 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 ANKRD1Q15327 319 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 DLGAP5Q15398 846 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 AKNAD1Q5T1N1 836 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 STOX1Q6ZVD7 989 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 KRT23Q9C075 422 aa20.27■□□□□ 0.83
CCDC28B-202ENST00000421922 FLT1P17948 1338 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 CPA1P15085 419 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 PICALMQ13492 652 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 SBK1Q52WX2 424 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 CTR9Q6PD62 1173 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 NOL8Q76FK4 1167 aaKnown RBP20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 TBC1D10CQ8IV04 446 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 GMLQ99445 158 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 RNF181Q9P0P0 153 aa20.26■□□□□ 0.83
CCDC28B-202ENST00000421922 GRIN3BO60391 1043 aa20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 MCM5P33992 734 aa20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 RRP12Q5JTH9 1297 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 APOBEC3HQ6NTF7 200 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 CDC42EP5Q6NZY7 148 aa20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 DHX32Q7L7V1 743 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 STAG1Q8WVM7 1258 aa20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 SAP30BPQ9UHR5 308 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 ANAPC4Q9UJX5 808 aa20.25■□□□□ 0.83
CCDC28B-202ENST00000421922 DDX60LQ5H9U9 1706 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-202ENST00000421922 PCP11498 1178 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-202ENST00000421922 PRELPP51888 382 aa20.24■□□□□ 0.83
CCDC28B-202ENST00000421922 STK11IPQ8N1F8 1099 aa20.24■□□□□ 0.83
CCDC28B-202ENST00000421922 MYO1BO43795 1136 aa20.23■□□□□ 0.83
CCDC28B-202ENST00000421922 CD2BP2O95400 341 aaKnown RBP20.23■□□□□ 0.83
CCDC28B-202ENST00000421922 AK2P54819 239 aa20.23■□□□□ 0.83
CCDC28B-202ENST00000421922 PDE4BQ07343 736 aa20.23■□□□□ 0.83
CCDC28B-202ENST00000421922 CYP2D7A0A087X1C5 515 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 SLC4A3P48751 1232 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 GMPSP49915 693 aaPredicted RBP20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 SLC4A8Q2Y0W8 1093 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 TCEANC2Q96MN5 208 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 TTC14Q96N46 770 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 NBPF3Q9H094 633 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 ZNF287Q9HBT7 754 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 NEDD4P46934 1319 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 ZNF541Q9H0D2 1346 aa20.22■□□□□ 0.83
CCDC28B-202ENST00000421922 SPDYE2BA6NHP3 402 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 B4E1Z4 1266 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 HLA-DOAP06340 250 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 SPDYE6P0CI01 402 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 C12orf60Q5U649 245 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 Q6ZUG5 572 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 TTC6Q86TZ1 520 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 ESR2Q92731 530 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 DPF2Q92785 391 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 LIMCH1Q9UPQ0 1083 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 WDR19Q8NEZ3 1342 aa20.21■□□□□ 0.83
CCDC28B-202ENST00000421922 PRC1O43663 620 aa20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 WDHD1O75717 1129 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 CYP2D6P10635 497 aa20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 SART3Q15020 963 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 MB21D2Q8IYB1 491 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 ALDH8A1Q9H2A2 487 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 TDRD3Q9H7E2 651 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 MYOZ2Q9NPC6 264 aa20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 MKRN1Q9UHC7 482 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 PCDHAC2Q9Y5I4 1007 aa20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 MYH8P13535 1937 aa20.2■□□□□ 0.82
CCDC28B-202ENST00000421922 H7C1D1 291 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 C9orf131Q5VYM1 1079 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 MICALL2Q8IY33 904 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 GPC2Q8N158 579 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 MTMR14Q8NCE2 650 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 ZSCAN31Q96LW9 406 aaPredicted RBP20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 OSBPL5Q9H0X9 879 aaPredicted RBP20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 ROBO3Q96MS0 1386 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 ERICH2A1L162 156 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 RANBP6O60518 1105 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 KDM4AO75164 1064 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 NT5C2P49902 561 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 CHST3Q7LGC8 479 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 ZSCAN29Q8IWY8 852 aaPredicted RBP20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 PRMT6Q96LA8 375 aaPredicted RBP20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 IDI2Q9BXS1 227 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 TRIM34Q9BYJ4 488 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms