RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 VPS53Q5VIR6 699 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 TXNRD3Q86VQ6 643 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 AMOTL1Q8IY63 956 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 RTKN2Q8IZC4 609 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 LCORLQ8N3X6 602 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 MIGA1Q8NAN2 632 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 KCNB2Q92953 911 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 CRNKL1Q9BZJ0 848 aaKnown RBP7.08□□□□□ -1.28
HMGB3-202ENST00000419110 PUS7LQ9H0K6 701 aaKnown RBP7.08□□□□□ -1.28
HMGB3-202ENST00000419110 ARMT1Q9H993 441 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 JAG2Q9Y219 1238 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 SUGT1Q9Y2Z0 365 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 GREB1LQ9C091 1923 aaPredicted RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 ECE2O60344 883 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 BAG3O95817 575 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 CYP21A2P08686 494 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 DPEP1P16444 411 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 FGD1P98174 961 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 MECOMQ03112 1051 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 KIAA2012Q0VF49 1180 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 TRDNQ13061 729 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 SLFNL1Q499Z3 407 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 DALRD3Q5D0E6 543 aaKnown RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 NOL8Q76FK4 1167 aaKnown RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 NSUN4Q96CB9 384 aaKnown RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 PSMD1Q99460 953 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 RTFDC1Q9BY42 306 aaPredicted RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 EPB41L4AQ9HCS5 686 aaPredicted RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 PIM2Q9P1W9 311 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 ARPP21Q9UBL0 812 aaPredicted RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 PPP1R1BQ9UD71 204 aaPredicted RBP7.07□□□□□ -1.28
HMGB3-202ENST00000419110 CD2APQ9Y5K6 639 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 SLC4A4Q9Y6R1 1079 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 ROBO3Q96MS0 1386 aa7.07□□□□□ -1.28
HMGB3-202ENST00000419110 COL4A5P29400 1685 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 WDR19Q8NEZ3 1342 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 MYO3BQ8WXR4 1341 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 WTIPA6NIX2 430 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 C21orf2O43822 256 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 CD2BP2O95400 341 aaKnown RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 RPS6KB1P23443 525 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 HAND2P61296 217 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 ALX1Q15699 326 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 TSGA10IPQ3SY00 556 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 OLFM4Q6UX06 510 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 RUFY3Q7L099 469 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 PODNQ7Z5L7 613 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 NIM1KQ8IY84 436 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 KHSRPQ92945 711 aaKnown RBP eCLIP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 NEK1Q96PY6 1258 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 STRBPQ96SI9 672 aaKnown RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 RIOK1Q9BRS2 568 aaKnown RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 SLKQ9H2G2 1235 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 TAOK3Q9H2K8 898 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 RNF41Q9H4P4 317 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 CNNM2Q9H8M5 875 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 DBNDD1Q9H9R9 158 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 SH2B1Q9NRF2 756 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 PDRG1Q9NUG6 133 aa7.06□□□□□ -1.28
HMGB3-202ENST00000419110 AATFQ9NY61 560 aaKnown RBP eCLIP7.06□□□□□ -1.28
HMGB3-202ENST00000419110 COL2A1P02458 1487 aaPredicted RBP7.05□□□□□ -1.28
HMGB3-202ENST00000419110 GAKO14976 1311 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 ZNF213O14771 459 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 FOXP2O15409 715 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 PPP1R37O75864 691 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 SLC3A2P08195 630 aaKnown RBP7.05□□□□□ -1.28
HMGB3-202ENST00000419110 PCP11498 1178 aaKnown RBP7.05□□□□□ -1.28
HMGB3-202ENST00000419110 SLC4A3P48751 1232 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 FKBP1AP62942 108 aaKnown RBP7.05□□□□□ -1.28
HMGB3-202ENST00000419110 GTF2IP78347 998 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 AOC3Q16853 763 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 ADCK5Q3MIX3 580 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 GIMAP6Q6P9H5 292 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 ADGRA1Q86SQ6 560 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 TBC1D10CQ8IV04 446 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 NCOA7Q8NI08 942 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 TMC2Q8TDI7 906 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 ZSCAN31Q96LW9 406 aaPredicted RBP7.05□□□□□ -1.28
HMGB3-202ENST00000419110 TTC14Q96N46 770 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 SPON1Q9HCB6 807 aa7.05□□□□□ -1.28
HMGB3-202ENST00000419110 DOCK1Q14185 1865 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 NEDD4P46934 1319 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 LTBP3Q9NS15 1303 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 A0A0G2JLW4 131 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 USP17L3A6NCW0 530 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 USP17L4A6NCW7 530 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 PATL2C9JE40 543 aaKnown RBP7.04□□□□□ -1.28
HMGB3-202ENST00000419110 E7EWF7 191 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 FGAP02671 866 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 MCM5P33992 734 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 BTDP43251 543 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 USP5P45974 858 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 NT5C2P49902 561 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 AK2P54819 239 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 SART3Q15020 963 aaKnown RBP7.04□□□□□ -1.28
HMGB3-202ENST00000419110 DIXDC1Q155Q3 683 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 STRIP1Q5VSL9 837 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 TTLL5Q6EMB2 1281 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 STOX1Q6ZVD7 989 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 USP17L1Q7RTZ2 530 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms