RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 WDR17Q8IZU2 1322 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 LRRC37A3O60309 1634 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 KIF5CO60282 957 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 STX10O60499 249 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 FBXW10Q5XX13 1052 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 CEP112Q8N8E3 955 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 AFAP1L1Q8TED9 768 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 INTS13Q9NVM9 706 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 CAMTA1Q9Y6Y1 1673 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 CLGNO14967 610 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 CCDC175P0C221 793 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 AKAP17AQ02040 695 aaKnown RBP16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 TC2NQ8N9U0 490 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 HNRNPLLQ8WVV9 542 aaKnown RBP16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 RIN2Q8WYP3 895 aaPredicted RBP16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 C8orf76Q96K31 380 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 MYD88Q99836 296 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 ACBD3Q9H3P7 528 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 CDC23Q9UJX2 597 aa16.79■□□□□ 0.28
NCKIPSD-204ENST00000416649 A0A087WUV0 522 aaPredicted RBP16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 CCT5P48643 541 aa16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 DHX32Q7L7V1 743 aaKnown RBP16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 CEP83Q9Y592 693 aa16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 COL15A1P39059 1388 aa16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 PDIA6Q15084 440 aa16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 TRMT44Q8IYL2 757 aaKnown RBP16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 U3KPZ7 1027 aaPredicted RBP16.78■□□□□ 0.28
NCKIPSD-204ENST00000416649 CARMIL3Q8ND23 1372 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 POTEB2H3BUK9 544 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 IL2RBP14784 551 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 KSR2Q6VAB6 950 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 DDX46Q7L014 1031 aaKnown RBP16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 KAT2BQ92831 832 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 SMARCC1Q92922 1105 aaPredicted RBP16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 FAM212AQ96EL1 285 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 CLIC6Q96NY7 704 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 MROH7-TTC4A0A0A0MT08 1334 aa16.77■□□□□ 0.28
NCKIPSD-204ENST00000416649 SUGP1Q8IWZ8 645 aaKnown RBP16.77■□□□□ 0.27
NCKIPSD-204ENST00000416649 CTAGE15A4D2H0 777 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 A1BGP04217 495 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 CTAGE8P0CG41 777 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 SPECC1LQ69YQ0 1117 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 CTAGE6Q86UF2 777 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 CTAGE4Q8IX94 777 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 GPHNQ9NQX3 736 aaPredicted RBP16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 IBSPP21815 317 aaPredicted RBP16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 MYSM1Q5VVJ2 828 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 DDX21Q9NR30 783 aaKnown RBP eCLIP16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 FAM208AQ9UK61 1670 aaKnown RBP16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 RAB21Q9UL25 225 aa16.76■□□□□ 0.27
NCKIPSD-204ENST00000416649 PDIA3P30101 505 aaKnown RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 ATP6V1AP38606 617 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 USP5P45974 858 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 EIF5P55010 431 aaKnown RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 PDE4BQ07343 736 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 USPL1Q5W0Q7 1092 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 NOA1Q8NC60 698 aaKnown RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 CDC5LQ99459 802 aaKnown RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 GBP3Q9H0R5 595 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 PXDNLA1KZ92 1463 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 CTAGE9A4FU28 777 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 HOXB7P09629 217 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 SNRPA1P09661 255 aaKnown RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 FDPSP14324 419 aaKnown RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 ZNF827Q17R98 1081 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 AXDND1Q5T1B0 1012 aaPredicted RBP16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 ANO1Q5XXA6 986 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 SLC35F6Q8N357 371 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 NFE2L3Q9Y4A8 694 aa16.75■□□□□ 0.27
NCKIPSD-204ENST00000416649 PHRF1Q9P1Y6 1649 aaKnown RBP16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 EXOC5O00471 708 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 HSP90AB3PQ58FF7 597 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 MSANTD4Q8NCY6 345 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 SUCLG2Q96I99 432 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 SNRKQ9NRH2 765 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 SUFUQ9UMX1 484 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 YEATS4O95619 227 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 CDC27P30260 824 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 IGSF22Q8N9C0 903 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 ZBTB3Q9H5J0 574 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 MED4Q9NPJ6 270 aa16.74■□□□□ 0.27
NCKIPSD-204ENST00000416649 CMA1P23946 247 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 HNRNPH1P31943 449 aaKnown RBP16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 SPECC1Q5M775 1068 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 PCDHA5Q9Y5H7 936 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 FOXN1O15353 648 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 ZMYND10O75800 440 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 IGKV5-2P06315 115 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 NCAPH2Q6IBW4 605 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 RAD9BQ6WBX8 426 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 CEP89Q96ST8 783 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 HINFPQ9BQA5 517 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 EHD4Q9H223 541 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 POLR3EQ9NVU0 708 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 KIF28PB7ZC32 967 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 EBAG9O00559 213 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 CPLX1O14810 134 aa16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 DDX58O95786 925 aaKnown RBP16.73■□□□□ 0.27
NCKIPSD-204ENST00000416649 LONRF3Q496Y0 759 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms