RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 USP17L12C9JPN9 530 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 USP17L21D6R901 530 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 E7EWF7 191 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 ZNF213O14771 459 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 SPDYE6P0CI01 402 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 OGFOD1Q8N543 542 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 INCENPQ9NQS7 918 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 HDAC9Q9UKV0 1011 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 MINDY4BA8MYZ0 360 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 RPS12P25398 132 aaKnown RBP11.51□□□□□ -0.57
RIF1-202ENST00000414861 PPARAQ07869 468 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 PICALMQ13492 652 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 MICALL2Q8IY33 904 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 STK11IPQ8N1F8 1099 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 TCEANC2Q96MN5 208 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 TDRD3Q9H7E2 651 aaKnown RBP11.51□□□□□ -0.57
RIF1-202ENST00000414861 MCM9Q9NXL9 1143 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 SAP30BPQ9UHR5 308 aaKnown RBP11.51□□□□□ -0.57
RIF1-202ENST00000414861 SIPA1L1O43166 1804 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 NEDD4P46934 1319 aa11.51□□□□□ -0.57
RIF1-202ENST00000414861 NEK4P51957 841 aa11.5□□□□□ -0.57
RIF1-202ENST00000414861 ZNF280AP59817 542 aaPredicted RBP11.5□□□□□ -0.57
RIF1-202ENST00000414861 DLGAP5Q15398 846 aa11.5□□□□□ -0.57
RIF1-202ENST00000414861 GPC2Q8N158 579 aa11.5□□□□□ -0.57
RIF1-202ENST00000414861 ZBED3Q96IU2 234 aaPredicted RBP11.5□□□□□ -0.57
RIF1-202ENST00000414861 TM6SF1Q9BZW5 370 aa11.5□□□□□ -0.57
RIF1-202ENST00000414861 ZSWIM6Q9HCJ5 1215 aa11.5□□□□□ -0.57
RIF1-202ENST00000414861 MYOZ2Q9NPC6 264 aa11.5□□□□□ -0.57
RIF1-202ENST00000414861 ARPP21Q9UBL0 812 aaPredicted RBP11.5□□□□□ -0.57
RIF1-202ENST00000414861 CLRN2A0PK11 232 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 GRIN3BO60391 1043 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 DDNO94850 711 aaPredicted RBP11.49□□□□□ -0.57
RIF1-202ENST00000414861 KRT32Q14532 448 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 DPF2Q92785 391 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 DDRGK1Q96HY6 314 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 TTC14Q96N46 770 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 FAM198AQ9UFP1 575 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 CNOT7Q9UIV1 285 aaKnown RBP11.49□□□□□ -0.57
RIF1-202ENST00000414861 WNT10BO00744 389 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 PLCD1P51178 756 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 NBPF9Q3BBW0 867 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 SBK1Q52WX2 424 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 RUFY3Q7L099 469 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 SAMD7Q7Z3H4 446 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 ZFPM1Q8IX07 1006 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 MTMR14Q8NCE2 650 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 NEK1Q96PY6 1258 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 TBC1D2Q9BYX2 928 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 ANAPC4Q9UJX5 808 aa11.49□□□□□ -0.57
RIF1-202ENST00000414861 TCP10Q12799 353 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 AKNAD1Q5T1N1 836 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 C12orf60Q5U649 245 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 BLOC1S2Q6QNY1 142 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 STAG1Q8WVM7 1258 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 MYH8P13535 1937 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 ROBO3Q96MS0 1386 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 RPS6KB1P23443 525 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 PSMA5P28066 241 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 SPDYE2Q495Y8 402 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 TBC1D10BQ4KMP7 808 aaPredicted RBP11.48□□□□□ -0.57
RIF1-202ENST00000414861 CHST3Q7LGC8 479 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 MB21D2Q8IYB1 491 aaPredicted RBP11.48□□□□□ -0.57
RIF1-202ENST00000414861 DYNLL2Q96FJ2 89 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 IDI2Q9BXS1 227 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 LRRC2Q9BYS8 371 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 OSBPL5Q9H0X9 879 aaPredicted RBP11.48□□□□□ -0.57
RIF1-202ENST00000414861 GPRC5DQ9NZD1 345 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 CYP46A1Q9Y6A2 500 aa11.48□□□□□ -0.57
RIF1-202ENST00000414861 B4E1Z4 1266 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 SLC4A3P48751 1232 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 RBM26Q5T8P6 1007 aaKnown RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 NOL8Q76FK4 1167 aaKnown RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 SLC44A5Q8NCS7 719 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 ZNF70Q9UC06 446 aaPredicted RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 ASTN2O75129 1339 aaPredicted RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 PRDM1O75626 825 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 POLR3DP05423 398 aaPredicted RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 EPS15P42566 896 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 ANTXR2P58335 489 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 KIF4BQ2VIQ3 1234 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 NCOA7Q8NI08 942 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 TRPM4Q8TD43 1214 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 SNX21Q969T3 373 aa11.47□□□□□ -0.57
RIF1-202ENST00000414861 LARP6Q9BRS8 491 aaKnown RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 SCAF8Q9UPN6 1271 aaKnown RBP11.47□□□□□ -0.57
RIF1-202ENST00000414861 TCP10L2B9ZVM9 353 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 ST18O60284 1047 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 SLURP2P0DP57 97 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 AK2P54819 239 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 RRP12Q5JTH9 1297 aaKnown RBP11.46□□□□□ -0.57
RIF1-202ENST00000414861 MFSD6Q6ZSS7 791 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 CYB5R4Q7L1T6 521 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 SH3BP5LQ7L8J4 393 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 PDRG1Q9NUG6 133 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.46□□□□□ -0.57
RIF1-202ENST00000414861 CNTNAP1P78357 1384 aa11.46□□□□□ -0.57
RIF1-202ENST00000414861 POLR2AP24928 1970 aaKnown RBP11.46□□□□□ -0.57
RIF1-202ENST00000414861 DDTLA6NHG4 134 aaPredicted RBP11.46□□□□□ -0.58
RIF1-202ENST00000414861 EXOSC10Q01780 885 aaKnown RBP11.46□□□□□ -0.58
RIF1-202ENST00000414861 DHX32Q7L7V1 743 aaKnown RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms