RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 GNAQP50148 359 aa12.77□□□□□ -0.36
PTPRF-204ENST00000412568 HS1BP3Q53T59 392 aa12.77□□□□□ -0.36
PTPRF-204ENST00000412568 CCDC70Q6NSX1 233 aa12.77□□□□□ -0.36
PTPRF-204ENST00000412568 BRAPQ7Z569 592 aa12.77□□□□□ -0.36
PTPRF-204ENST00000412568 CUL5Q93034 780 aa12.77□□□□□ -0.36
PTPRF-204ENST00000412568 RAB34Q9BZG1 259 aa12.77□□□□□ -0.36
PTPRF-204ENST00000412568 GOLGA8HP0CJ92 632 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 PLCG2P16885 1265 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 IBSPP21815 317 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-204ENST00000412568 ARHGAP29Q52LW3 1261 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 ZNF654Q8IZM8 581 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 LCORLQ8N3X6 602 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 CALML4Q96GE6 196 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 TTF2Q9UNY4 1162 aaKnown RBP12.77□□□□□ -0.37
PTPRF-204ENST00000412568 SAMM50Q9Y512 469 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 TECPR2O15040 1411 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 PDIA6Q15084 440 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 DIXDC1Q155Q3 683 aa12.77□□□□□ -0.37
PTPRF-204ENST00000412568 RTL9Q8NET4 1388 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 TNKSO95271 1327 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 MYO1BO43795 1136 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 SERPINB2P05120 415 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 C17orf53Q8N3J3 647 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-204ENST00000412568 AIFM3Q96NN9 605 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 NUP88Q99567 741 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-204ENST00000412568 LLPHQ9BRT6 129 aaKnown RBP12.76□□□□□ -0.37
PTPRF-204ENST00000412568 H0YIN7 160 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 CALM1P0DP23 149 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 CALM2P0DP24 149 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 CALM3P0DP25 149 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 MTIF2P46199 727 aaKnown RBP12.76□□□□□ -0.37
PTPRF-204ENST00000412568 JAKMIP3Q5VZ66 844 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 CELF1Q92879 486 aaKnown RBP12.76□□□□□ -0.37
PTPRF-204ENST00000412568 EYA3Q99504 573 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 SPATA31D1Q6ZQQ2 1576 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 BTBD18B2RXH4 712 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 N4BP3O15049 544 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 NR1I2O75469 434 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 DEXIO95424 95 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 KRI1Q8N9T8 703 aaKnown RBP12.76□□□□□ -0.37
PTPRF-204ENST00000412568 GJA3Q9Y6H8 435 aa12.76□□□□□ -0.37
PTPRF-204ENST00000412568 ERVV-1B6SEH8 477 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 POLR2DO15514 142 aaKnown RBP12.75□□□□□ -0.37
PTPRF-204ENST00000412568 URI1O94763 535 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-204ENST00000412568 ADD2P35612 726 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 FOXO4P98177 505 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 FAM160A1Q05DH4 1040 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 TCERG1LQ5VWI1 586 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 KIF18AQ8NI77 898 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 RRP36Q96EU6 259 aaKnown RBP12.75□□□□□ -0.37
PTPRF-204ENST00000412568 GPR108Q9NPR9 543 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 SKILP12757 684 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 CCDC148Q8NFR7 591 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 DEPDC5O75140 1603 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 CYP2E1P05181 493 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-204ENST00000412568 PARP1P09874 1014 aaKnown RBP12.75□□□□□ -0.37
PTPRF-204ENST00000412568 JDP2Q8WYK2 163 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 TRIM47Q96LD4 638 aa12.75□□□□□ -0.37
PTPRF-204ENST00000412568 ERCC3P19447 782 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 UBE3CQ15386 1083 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 LARGE2Q8N3Y3 721 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 IFNKQ9P0W0 207 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 PFKFB2O60825 505 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 ASIC1P78348 528 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 UBE4AQ14139 1066 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 TBC1D9BQ66K14 1250 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 C6orf50Q9HD87 102 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 FBXO3Q9UK99 471 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 HDAC9Q9UKV0 1011 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 NCAPD2Q15021 1401 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 PPLO60437 1756 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 MYSM1Q5VVJ2 828 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 KRT27Q7Z3Y8 459 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 FCHSD1Q86WN1 690 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 MARCH10Q8NA82 808 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-204ENST00000412568 ISCA1Q9BUE6 129 aa12.74□□□□□ -0.37
PTPRF-204ENST00000412568 CALML3P27482 149 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 PRKG1Q13976 671 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 ZBTB9Q96C00 473 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 ZSWIM4Q9H7M6 989 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 KCNH3Q9ULD8 1083 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 ZNF202O95125 648 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 KIAA1328Q86T90 577 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 FANCBQ8NB91 859 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 ZNF274Q96GC6 653 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-204ENST00000412568 USP40Q9NVE5 1235 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 PKD2L1Q9P0L9 805 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 GSDMDP57764 484 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 ZSWIM5Q9P217 1185 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 AFF2P51816 1311 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 NEMFO60524 1076 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 CACNA2D4Q7Z3S7 1137 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 CLIC6Q96NY7 704 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 TRERF1Q96PN7 1200 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 MMRN2Q9H8L6 949 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 CBX8Q9HC52 389 aa12.73□□□□□ -0.37
PTPRF-204ENST00000412568 SPDYE4A6NLX3 237 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 PRDX5P30044 214 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 RILPL1Q5EBL4 403 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms