RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 NAV1Q8NEY1 1877 aa13.2□□□□□ -0.3
CHMP3-205ENST00000409810 LDLRAD1Q5T700 205 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 TSHZ3Q63HK5 1081 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 B4GALNT3Q6L9W6 998 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 ADGRA1Q86SQ6 560 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 CHD1LQ86WJ1 897 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 RASAL3Q86YV0 1011 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 SH3RF3Q8TEJ3 882 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-205ENST00000409810 EDC3Q96F86 508 aaKnown RBP13.19□□□□□ -0.3
CHMP3-205ENST00000409810 CSRNP1Q96S65 589 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 ZNF341Q9BYN7 854 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 CSADQ9Y600 493 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 ATRNL1Q5VV63 1379 aa13.19□□□□□ -0.3
CHMP3-205ENST00000409810 SALL3Q9BXA9 1300 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 ZNF532Q9HCE3 1301 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 MAGEB6P1A0A0J9YX57 407 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 USP2O75604 605 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-205ENST00000409810 NEFLP07196 543 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 ADD2P35612 726 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 MAP2K1Q02750 393 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-205ENST00000409810 NUCB1Q02818 461 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 UBE3CQ15386 1083 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 CDAN1Q8IWY9 1227 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 REM2Q8IYK8 340 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-205ENST00000409810 KBTBD3Q8NAB2 608 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 MIGA1Q8NAN2 632 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 PI4K2BQ8TCG2 481 aa13.18□□□□□ -0.3
CHMP3-205ENST00000409810 OTUD7AQ8TE49 926 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-205ENST00000409810 OSBPL5Q9H0X9 879 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-205ENST00000409810 DDX4Q9NQI0 724 aaKnown RBP13.18□□□□□ -0.3
CHMP3-205ENST00000409810 LAMB1P07942 1786 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 FLT1P17948 1338 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 FAM155AB1AL88 458 aaPredicted RBP13.17□□□□□ -0.3
CHMP3-205ENST00000409810 USP5P45974 858 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 PDE1AP54750 535 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 DYNLL1P63167 89 aaKnown RBP13.17□□□□□ -0.3
CHMP3-205ENST00000409810 MAP3K9P80192 1104 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.17□□□□□ -0.3
CHMP3-205ENST00000409810 TGFBRAP1Q8WUH2 860 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 AIDAQ96BJ3 306 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 SLC10A4Q96EP9 437 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 WRNIP1Q96S55 665 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 BEGAINQ9BUH8 593 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 CRNKL1Q9BZJ0 848 aaKnown RBP13.17□□□□□ -0.3
CHMP3-205ENST00000409810 DHX36Q9H2U1 1008 aaKnown RBP13.17□□□□□ -0.3
CHMP3-205ENST00000409810 STAP2Q9UGK3 403 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 FZD1Q9UP38 647 aa13.17□□□□□ -0.3
CHMP3-205ENST00000409810 TCRBV5S4A2TA0A5A2 114 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 AOC2O75106 756 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 HLA-DOAP06340 250 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 ZFYP08048 801 aaPredicted RBP13.16□□□□□ -0.3
CHMP3-205ENST00000409810 MIGA2Q7L4E1 593 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 MAPKAPK5Q8IW41 473 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 ZFPM1Q8IX07 1006 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 RIOK1Q9BRS2 568 aaKnown RBP13.16□□□□□ -0.3
CHMP3-205ENST00000409810 DOCK1Q14185 1865 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 ATAD5Q96QE3 1844 aa13.16□□□□□ -0.3
CHMP3-205ENST00000409810 MYH8P13535 1937 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 DDTLA6NHG4 134 aaPredicted RBP13.15□□□□□ -0.3
CHMP3-205ENST00000409810 TBC1D12O60347 775 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 ZBTB48P10074 688 aaPredicted RBP13.15□□□□□ -0.3
CHMP3-205ENST00000409810 EVI5LQ96CN4 794 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 WNK4Q96J92 1243 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 FSD1Q9BTV5 496 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 TRIM34Q9BYJ4 488 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 PI4KBQ9UBF8 816 aa13.15□□□□□ -0.3
CHMP3-205ENST00000409810 DDX60LQ5H9U9 1706 aaKnown RBP13.15□□□□□ -0.3
CHMP3-205ENST00000409810 BAZ2AQ9UIF9 1905 aaKnown RBP13.15□□□□□ -0.3
CHMP3-205ENST00000409810 SIPA1L1O43166 1804 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 RNF113AO15541 343 aaKnown RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 HSPA1AP0DMV8 641 aaKnown RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 HSPA1BP0DMV9 641 aaKnown RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 KIF23Q02241 960 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 SREBF2Q12772 1141 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 VGLL4Q14135 290 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 SPRYD7Q5W111 196 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 SH3BP5LQ7L8J4 393 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 APPBP2Q92624 585 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 DDRGK1Q96HY6 314 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 CLMNQ96JQ2 1002 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 ELP3Q9H9T3 547 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 HERC5Q9UII4 1024 aaKnown RBP13.14□□□□□ -0.31
CHMP3-205ENST00000409810 ZNF112Q9UJU3 913 aa13.14□□□□□ -0.31
CHMP3-205ENST00000409810 CA12O43570 354 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 MBD4O95243 580 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 TICAM2Q86XR7 235 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 AMOTL1Q8IY63 956 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 LCORLQ8N3X6 602 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 CRACR2BQ8N4Y2 399 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-205ENST00000409810 OSBPL3Q9H4L5 887 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.13□□□□□ -0.31
CHMP3-205ENST00000409810 WBP1LQ9NX94 342 aa13.13□□□□□ -0.31
CHMP3-205ENST00000409810 MANSC4A6NHS7 340 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-205ENST00000409810 SPDYE5A6NIY4 337 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 MAP3K10Q02779 954 aa13.12□□□□□ -0.31
CHMP3-205ENST00000409810 MKRN3Q13064 507 aaKnown RBP13.12□□□□□ -0.31
CHMP3-205ENST00000409810 NOL9Q5SY16 702 aaKnown RBP13.12□□□□□ -0.31
CHMP3-205ENST00000409810 TTC6Q86TZ1 520 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms