RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 NACA2Q9H009 215 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 DCCP43146 1447 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 PLSCR1O15162 318 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 ZNF354CQ86Y25 554 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 UIMC1Q96RL1 719 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 GGA3Q9NZ52 723 aa8.32□□□□□ -1.08
SCN9A-202ENST00000409435 CCL15-CCL14A0A0B4J2E2 113 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 PCCAP05165 728 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-202ENST00000409435 MX1P20591 662 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 RRP1P56182 461 aaKnown RBP8.31□□□□□ -1.08
SCN9A-202ENST00000409435 CCL15Q16663 113 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TAX1BP1Q86VP1 789 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 FCHSD1Q86WN1 690 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 SP8Q8IXZ3 490 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TRERF1Q96PN7 1200 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 C22orf23Q9BZE7 217 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 PHAXQ9H814 394 aaKnown RBP8.31□□□□□ -1.08
SCN9A-202ENST00000409435 STK24Q9Y6E0 443 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 ESPNB1AK53 854 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TRPA1O75762 1119 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 KIAA1841Q6NSI8 718 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 LDHDQ86WU2 507 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 MCF2L2Q86YR7 1114 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 PDILTQ8N807 584 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 NCOA7Q8NI08 942 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TRIM5Q9C035 493 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 FAM184BQ9ULE4 1060 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 MRVI1Q9Y6F6 885 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 ZHX2Q9Y6X8 837 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 SYNMO15061 1565 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 GTF2A2P52657 109 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 FAM193AP78312 1265 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 CFAP45Q9UL16 551 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 USP16Q9Y5T5 823 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TECPR2O15040 1411 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 KIF20AO95235 890 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 RASSF7Q02833 373 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 SCARF1Q14162 830 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 RNF168Q8IYW5 571 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-202ENST00000409435 FAM212AQ96EL1 285 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 POTEB2H3BUK9 544 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TBCAO75347 108 aaKnown RBP8.31□□□□□ -1.08
SCN9A-202ENST00000409435 ARID5AQ03989 594 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 CALML4Q96GE6 196 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 TSPY26PQ9H489 355 aa8.31□□□□□ -1.08
SCN9A-202ENST00000409435 PHACTR2O75167 634 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 PDCP20941 246 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 IL13P35225 146 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 KIF3CO14782 793 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 MBD3O95983 291 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 ZSCAN20P17040 1043 aaPredicted RBP8.3□□□□□ -1.08
SCN9A-202ENST00000409435 HAND2P61296 217 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 UBE4AQ14139 1066 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 ANGEL2Q5VTE6 544 aaKnown RBP8.3□□□□□ -1.08
SCN9A-202ENST00000409435 GTF3C6Q969F1 213 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 PSMD1Q99460 953 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 BICC1Q9H694 974 aaKnown RBP8.3□□□□□ -1.08
SCN9A-202ENST00000409435 PAG1Q9NWQ8 432 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 IL16Q14005 1332 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 SEMA3EO15041 775 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 TFCP2Q12800 502 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 MAP1SQ66K74 1059 aaPredicted RBP8.3□□□□□ -1.08
SCN9A-202ENST00000409435 USP37Q86T82 979 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 CDAN1Q8IWY9 1227 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 GYG1P46976 350 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 ICA1Q05084 483 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 RNASELQ05823 741 aaKnown RBP8.3□□□□□ -1.08
SCN9A-202ENST00000409435 NOGQ13253 232 aa8.3□□□□□ -1.08
SCN9A-202ENST00000409435 MANSC4A6NHS7 340 aaPredicted RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 TRAK2O60296 914 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 ZNF594Q96JF6 807 aaPredicted RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 GCC2Q8IWJ2 1684 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 RNF123Q5XPI4 1314 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 STAMBPO95630 424 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 SPATA5Q8NB90 893 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 MBD5Q9P267 1494 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 KIF24Q5T7B8 1368 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 FKTNO75072 461 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 TMOD1P28289 359 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 Q3C1V9 767 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 SLC17A8Q8NDX2 589 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 GTF3C2Q8WUA4 911 aaPredicted RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 DIP2CQ9Y2E4 1556 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 GTF2F1P35269 517 aaKnown RBP eCLIP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 CEP57L1Q8IYX8 460 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 METTL13Q8N6R0 699 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 NAP1L4Q99733 375 aaKnown RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 DHX36Q9H2U1 1008 aaKnown RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 SHROOM2Q13796 1616 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 ZBED9Q6R2W3 1325 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 PLXNC1O60486 1568 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 MBD4O95243 580 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 GNAT1P11488 350 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 RNF187Q5TA31 235 aaPredicted RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 UTP14CQ5TAP6 766 aaKnown RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 SEPT14Q6ZU15 432 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 TMEM57Q8N5G2 664 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 JAKMIP1Q96N16 626 aaKnown RBP8.29□□□□□ -1.08
SCN9A-202ENST00000409435 TCP11L1Q9NUJ3 509 aa8.29□□□□□ -1.08
SCN9A-202ENST00000409435 HOXC10Q9NYD6 342 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms