RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 TLR7Q9NYK1 1049 aaKnown RBP23.7■■□□□ 1.38
SMARCB1-204ENST00000407422 DBNLQ9UJU6 430 aaKnown RBP23.7■■□□□ 1.38
SMARCB1-204ENST00000407422 TNRC18O15417 2968 aaPredicted RBP23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 DDTLA6NHG4 134 aaPredicted RBP23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 RGS19P49795 217 aa23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 ZSCAN29Q8IWY8 852 aaPredicted RBP23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 EAF2Q96CJ1 260 aaPredicted RBP23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 CCDC8Q9H0W5 538 aaPredicted RBP23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 LRP2BPQ9P2M1 347 aa23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 EXOC6BQ9Y2D4 811 aa23.69■■□□□ 1.38
SMARCB1-204ENST00000407422 GSTO1P78417 241 aa23.68■■□□□ 1.38
SMARCB1-204ENST00000407422 PPATQ06203 517 aa23.68■■□□□ 1.38
SMARCB1-204ENST00000407422 RCAN3Q9UKA8 241 aa23.68■■□□□ 1.38
SMARCB1-204ENST00000407422 COG6Q9Y2V7 657 aa23.68■■□□□ 1.38
SMARCB1-204ENST00000407422 LDHCP07864 332 aa23.67■■□□□ 1.38
SMARCB1-204ENST00000407422 CETPP11597 493 aa23.67■■□□□ 1.38
SMARCB1-204ENST00000407422 MS4A1P11836 297 aa23.67■■□□□ 1.38
SMARCB1-204ENST00000407422 SNAPC2Q13487 334 aa23.67■■□□□ 1.38
SMARCB1-204ENST00000407422 TAF1CQ15572 869 aaPredicted RBP23.67■■□□□ 1.38
SMARCB1-204ENST00000407422 PHF20L1A8MW92 1017 aa23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 CYP2E1P05181 493 aaPredicted RBP23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 SOX10P56693 466 aa23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 BTBD19C9JJ37 291 aa23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 CAP1Q01518 475 aa23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 NOL9Q5SY16 702 aaKnown RBP23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 FBXO46Q6PJ61 603 aaPredicted RBP23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 CD99L2Q8TCZ2 262 aa23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 ZNF512BQ96KM6 892 aaPredicted RBP23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 TRIM17Q9Y577 477 aa23.66■■□□□ 1.38
SMARCB1-204ENST00000407422 MAST2Q6P0Q8 1798 aa23.65■■□□□ 1.38
SMARCB1-204ENST00000407422 ZAP70P43403 619 aa23.65■■□□□ 1.38
SMARCB1-204ENST00000407422 SP3Q02447 781 aa23.65■■□□□ 1.38
SMARCB1-204ENST00000407422 OTOP1Q7RTM1 612 aa23.65■■□□□ 1.38
SMARCB1-204ENST00000407422 BRCA2P51587 3418 aa23.64■■□□□ 1.38
SMARCB1-204ENST00000407422 MAP3K10Q02779 954 aa23.64■■□□□ 1.38
SMARCB1-204ENST00000407422 ZFYVE28Q9HCC9 887 aa23.64■■□□□ 1.38
SMARCB1-204ENST00000407422 MLLT1Q03111 559 aaPredicted RBP23.63■■□□□ 1.37
SMARCB1-204ENST00000407422 ERO1AQ96HE7 468 aa23.63■■□□□ 1.37
SMARCB1-204ENST00000407422 ZBTB40Q9NUA8 1239 aa23.63■■□□□ 1.37
SMARCB1-204ENST00000407422 NAA16Q6N069 864 aaPredicted RBP23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 ADGRA1Q86SQ6 560 aa23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 SH3RF3Q8TEJ3 882 aaPredicted RBP23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 PIH1D3Q9NQM4 214 aaKnown RBP23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 DDX19BQ9UMR2 479 aa23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 KCNH4Q9UQ05 1017 aa23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 CDK5RAP2Q96SN8 1893 aa23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 NPM3O75607 178 aaKnown RBP23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 SIRT2Q8IXJ6 389 aa23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 AATFQ9NY61 560 aaKnown RBP eCLIP23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 NDUFB9Q9Y6M9 179 aa23.62■■□□□ 1.37
SMARCB1-204ENST00000407422 MOGSQ13724 837 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 DOCK1Q14185 1865 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 AACSQ86V21 672 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 ERC1Q8IUD2 1116 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 TEX11Q8IYF3 940 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 SCYL3Q8IZE3 742 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 IL1RAPL2Q9NP60 686 aa23.61■■□□□ 1.37
SMARCB1-204ENST00000407422 FAM196BA6NMK8 535 aa23.6■■□□□ 1.37
SMARCB1-204ENST00000407422 MAP4K4O95819 1239 aaPredicted RBP23.6■■□□□ 1.37
SMARCB1-204ENST00000407422 C20orf194Q5TEA3 1177 aa23.6■■□□□ 1.37
SMARCB1-204ENST00000407422 OSBPL5Q9H0X9 879 aaPredicted RBP23.6■■□□□ 1.37
SMARCB1-204ENST00000407422 ZCCHC17Q9NP64 241 aaKnown RBP23.6■■□□□ 1.37
SMARCB1-204ENST00000407422 TLR2O60603 784 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 RPAP2Q8IXW5 612 aaPredicted RBP23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 RHPN1Q8TCX5 695 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 EFCC1Q9HA90 598 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 PICK1Q9NRD5 415 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 ZHX2Q9Y6X8 837 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 PHIPQ8WWQ0 1821 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 ZSWIM8A7E2V4 1837 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 APBB1O00213 710 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 PTPRAP18433 802 aa23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 NOL10Q9BSC4 688 aaKnown RBP23.59■■□□□ 1.37
SMARCB1-204ENST00000407422 PTPRFP10586 1907 aa23.58■■□□□ 1.37
SMARCB1-204ENST00000407422 TBC1D12O60347 775 aa23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 CTNND1O60716 968 aaKnown RBP23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 HSP90AB4PQ58FF6 505 aa23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 ANKRD23Q86SG2 305 aa23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 PTPN22Q9Y2R2 807 aa23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 FOCADQ5VW36 1801 aa23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 MKI67P46013 3256 aaKnown RBP23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 COL2A1P02458 1487 aaPredicted RBP23.58■■□□□ 1.36
SMARCB1-204ENST00000407422 PDHXO00330 501 aa23.57■■□□□ 1.36
SMARCB1-204ENST00000407422 CXCL11O14625 94 aa23.57■■□□□ 1.36
SMARCB1-204ENST00000407422 BAG3O95817 575 aa23.57■■□□□ 1.36
SMARCB1-204ENST00000407422 PPP4CP60510 307 aa23.57■■□□□ 1.36
SMARCB1-204ENST00000407422 ANTXR1Q9H6X2 564 aa23.57■■□□□ 1.36
SMARCB1-204ENST00000407422 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.57■■□□□ 1.362e-8■■□□□ 13.5
SMARCB1-204ENST00000407422 SIPA1L1O43166 1804 aa23.57■■□□□ 1.36
SMARCB1-204ENST00000407422 IDH1O75874 414 aaKnown RBP23.56■■□□□ 1.36
SMARCB1-204ENST00000407422 CCDC84Q86UT8 332 aaPredicted RBP23.56■■□□□ 1.36
SMARCB1-204ENST00000407422 TGFBRAP1Q8WUH2 860 aa23.56■■□□□ 1.36
SMARCB1-204ENST00000407422 AFG3L2Q9Y4W6 797 aa23.56■■□□□ 1.36
SMARCB1-204ENST00000407422 ATAD5Q96QE3 1844 aa23.55■■□□□ 1.36
SMARCB1-204ENST00000407422 GPAT2Q6NUI2 795 aa23.55■■□□□ 1.36
SMARCB1-204ENST00000407422 HMMRO75330 724 aa23.55■■□□□ 1.36
SMARCB1-204ENST00000407422 MAPKAPK5Q8IW41 473 aa23.55■■□□□ 1.36
SMARCB1-204ENST00000407422 ARHGAP39Q9C0H5 1083 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms