RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MAP2K1Q02750 393 aaPredicted RBP11.33□□□□□ -0.6
VPS53-203ENST00000401468 GRIK5Q16478 980 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 RGMBQ6NW40 437 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 ERC1Q8IUD2 1116 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 C2orf69Q8N8R5 385 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 GCC1Q96CN9 775 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 BEGAINQ9BUH8 593 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 RWDD1Q9H446 243 aaPredicted RBP11.33□□□□□ -0.6
VPS53-203ENST00000401468 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.33□□□□□ -0.6
VPS53-203ENST00000401468 LAMB1P07942 1786 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 COL9A1P20849 921 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 KIF23Q02241 960 aaPredicted RBP11.32□□□□□ -0.6
VPS53-203ENST00000401468 UBE4AQ14139 1066 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 STRIP1Q5VSL9 837 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 EPAS1Q99814 870 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 SIL1Q9H173 461 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 EXOC6BQ9Y2D4 811 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 DOCK2Q92608 1830 aa11.32□□□□□ -0.6
VPS53-203ENST00000401468 CHAF1AQ13111 956 aaPredicted RBP11.31□□□□□ -0.6
VPS53-203ENST00000401468 G3BP1Q13283 466 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS53-203ENST00000401468 PROX2Q3B8N5 592 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 RHPN1Q8TCX5 695 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 DDX12PQ92771 950 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 WNT2BQ93097 391 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 KIF1BPQ96EK5 621 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 SSC5DA1L4H1 1573 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 CDK5RAP2Q96SN8 1893 aa11.31□□□□□ -0.6
VPS53-203ENST00000401468 TRPA1O75762 1119 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 RBM5P52756 815 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS53-203ENST00000401468 TFCP2Q12800 502 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 PUM3Q15397 648 aaKnown RBP11.3□□□□□ -0.6
VPS53-203ENST00000401468 CFAP100Q494V2 611 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 METTL24Q5JXM2 366 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 PRPF38BQ5VTL8 546 aaKnown RBP11.3□□□□□ -0.6
VPS53-203ENST00000401468 ZNF804AQ7Z570 1209 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 RASAL3Q86YV0 1011 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 OGFOD1Q8N543 542 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 VEZTQ9HBM0 779 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 PPP4R2Q9NY27 417 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 CEP126Q9P2H0 1117 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 MYH7P12883 1935 aa11.3□□□□□ -0.6
VPS53-203ENST00000401468 MAP2K2P36507 400 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 THSD4Q6ZMP0 1018 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 LPIN2Q92539 896 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 PRMT6Q96LA8 375 aaPredicted RBP11.29□□□□□ -0.6
VPS53-203ENST00000401468 LRRCC1Q9C099 1032 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 WDR70Q9NW82 654 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 AKAP2Q9Y2D5 859 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 SALL3Q9BXA9 1300 aa11.29□□□□□ -0.6
VPS53-203ENST00000401468 SLC10A3P09131 477 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 CACNB3P54284 484 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 NOGQ13253 232 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 DLGAP5Q15398 846 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 ATP2B3Q16720 1220 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 TNNI3KQ59H18 835 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 C6orf132Q5T0Z8 1188 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 CENPQQ7L2Z9 268 aaPredicted RBP11.28□□□□□ -0.6
VPS53-203ENST00000401468 EAF2Q96CJ1 260 aaPredicted RBP11.28□□□□□ -0.6
VPS53-203ENST00000401468 CLMNQ96JQ2 1002 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 FAM84BQ96KN1 310 aaPredicted RBP11.28□□□□□ -0.6
VPS53-203ENST00000401468 RABGEF1Q9UJ41 708 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 FPGT-TNNI3KV9GXZ4 949 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 ATAD5Q96QE3 1844 aa11.28□□□□□ -0.6
VPS53-203ENST00000401468 COL1A1P02452 1464 aaPredicted RBP11.27□□□□□ -0.6
VPS53-203ENST00000401468 A0A1B0GUL7 405 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 IL1R1P14778 569 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 BCAMP50895 628 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 NUCB1Q02818 461 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 E2F4Q16254 413 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 MFSD14BQ5SR56 506 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 FBXO33Q7Z6M2 555 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 HHIPL1Q96JK4 782 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 CSRNP1Q96S65 589 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 TDRD3Q9H7E2 651 aaKnown RBP11.27□□□□□ -0.61
VPS53-203ENST00000401468 RNF186Q9NXI6 227 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 HDAC9Q9UKV0 1011 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 ANGEL1Q9UNK9 670 aaKnown RBP11.27□□□□□ -0.61
VPS53-203ENST00000401468 TTF2Q9UNY4 1162 aaKnown RBP11.27□□□□□ -0.61
VPS53-203ENST00000401468 MYO3BQ8WXR4 1341 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 PITPNM2Q9BZ72 1349 aa11.27□□□□□ -0.61
VPS53-203ENST00000401468 MAST2Q6P0Q8 1798 aa11.26□□□□□ -0.61
VPS53-203ENST00000401468 TBC1D8O95759 1140 aa11.26□□□□□ -0.61
VPS53-203ENST00000401468 HIBADHP31937 336 aaKnown RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 OS9Q13438 667 aaPredicted RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 DGKZQ13574 1117 aa11.26□□□□□ -0.61
VPS53-203ENST00000401468 NBR1Q14596 966 aa11.26□□□□□ -0.61
VPS53-203ENST00000401468 NBPF12Q5TAG4 269 aaPredicted RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 CLASRPQ8N2M8 674 aaKnown RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 ZBED3Q96IU2 234 aaPredicted RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 ZNF512BQ96KM6 892 aaPredicted RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 MCOLN1Q9GZU1 580 aa11.26□□□□□ -0.61
VPS53-203ENST00000401468 DBNLQ9UJU6 430 aaKnown RBP11.26□□□□□ -0.61
VPS53-203ENST00000401468 PTPRFP10586 1907 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 CENPFP49454 3210 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 TCP10L2B9ZVM9 353 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 FRAT2O75474 233 aaPredicted RBP11.25□□□□□ -0.61
VPS53-203ENST00000401468 IFIT1P09914 478 aaKnown RBP11.25□□□□□ -0.61
VPS53-203ENST00000401468 SLC5A1P13866 664 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 ARID4AP29374 1257 aaPredicted RBP11.25□□□□□ -0.61
VPS53-203ENST00000401468 TIMM10P62072 90 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms