RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 CLASP1Q7Z460 1538 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 PTPRTO14522 1441 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 USP17L3A6NCW0 530 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 USP17L4A6NCW7 530 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 CHMP2AO43633 222 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 CCDC14Q49A88 953 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 USP17L1Q7RTZ2 530 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 FILIP1Q7Z7B0 1213 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 ADD3Q9UEY8 706 aaKnown RBP8.98□□□□□ -0.97
USP47-203ENST00000399455 CNPY2Q9Y2B0 182 aa8.98□□□□□ -0.97
USP47-203ENST00000399455 LUZP1Q86V48 1076 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 EXOC8Q8IYI6 725 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 ABI1Q8IZP0 508 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 NAA15Q9BXJ9 866 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 MYOM2P54296 1465 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 PCCAP05165 728 aaPredicted RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 EPB41P11171 864 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 SV2BQ7L1I2 683 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 GINS2Q9Y248 185 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 SPATA31A3Q5VYP0 1347 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 RIMS1Q86UR5 1692 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 CCNT1O60563 726 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 TNNT1P13805 278 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 YWHAEP62258 255 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 MAK16Q9BXY0 300 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 SYKP43405 635 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 YARSP54577 528 aaKnown RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 PDE1AP54750 535 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 COA7Q96BR5 231 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 FLOT1O75955 427 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 MARCKSP29966 332 aaPredicted RBP8.97□□□□□ -0.97
USP47-203ENST00000399455 ABCB5Q2M3G0 1257 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 CENPHQ9H3R5 247 aa8.97□□□□□ -0.97
USP47-203ENST00000399455 SBNO2Q9Y2G9 1366 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 STX10O60499 249 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 SLU7O95391 586 aaKnown RBP8.96□□□□□ -0.97
USP47-203ENST00000399455 POLR2MP0CAP2 368 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 CASQ1P31415 396 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 BTDP43251 543 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 PLCD1P51178 756 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 NSMCE1Q8WV22 266 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 ZNF496Q96IT1 587 aaPredicted RBP8.96□□□□□ -0.97
USP47-203ENST00000399455 SPAG5Q96R06 1193 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 ADGRB3O60242 1522 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 TMCO5BA8MYB1 307 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 PAFAH1B1P43034 410 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 SCNN1DP51172 638 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 KRT25Q7Z3Z0 450 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 ZBTB8OSQ8IWT0 167 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 NOX5Q96PH1 765 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 IKBKGQ9Y6K9 419 aa8.96□□□□□ -0.97
USP47-203ENST00000399455 HSPA1LP34931 641 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 KIF4BQ2VIQ3 1234 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 EHBP1Q8NDI1 1231 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 H0YCG3 227 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 DEXIO95424 95 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 HARSP12081 509 aaKnown RBP8.96□□□□□ -0.98
USP47-203ENST00000399455 METTL13Q8N6R0 699 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 RETREG2Q8NC44 543 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 METP08581 1390 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 GOLGA6L10A0A0M3HER8 536 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 PRPF6O94906 941 aaKnown RBP8.96□□□□□ -0.98
USP47-203ENST00000399455 MMP10P09238 476 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 EIF4A1P60842 406 aaKnown RBP8.96□□□□□ -0.98
USP47-203ENST00000399455 SPAG1Q07617 926 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 BIRC3Q13489 604 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.96□□□□□ -0.98
USP47-203ENST00000399455 ERVV-1B6SEH8 477 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 ZBTB7AO95365 584 aa8.96□□□□□ -0.98
USP47-203ENST00000399455 CFBP00751 764 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 ZNF594Q96JF6 807 aaPredicted RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 DDX39AO00148 427 aaKnown RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 TBC1D9Q6ZT07 1266 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 KRT26Q7Z3Y9 468 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 CCDC125Q86Z20 511 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 ESYT1Q9BSJ8 1104 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 SFPQP23246 707 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP47-203ENST00000399455 CHST3Q7LGC8 479 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 LMBR1Q8WVP7 490 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 AOX1Q06278 1338 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 USP6P35125 1406 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 KIF2AO00139 706 aaPredicted RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 EN1Q05925 392 aaPredicted RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 CHRNDQ07001 517 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 TSHZ3Q63HK5 1081 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 NCAPH2Q6IBW4 605 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 CEP85Q6P2H3 762 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 DHX32Q7L7V1 743 aaKnown RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 BRAPQ7Z569 592 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 FAM177A1Q8N128 213 aaPredicted RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 CWC15Q9P013 229 aaKnown RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 CLIP2Q9UDT6 1046 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 NEURL1BA8MQ27 555 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 ICA1Q05084 483 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 LETM2Q2VYF4 491 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 ADPGKQ9BRR6 497 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 GBP3Q9H0R5 595 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 GPBP1L1Q9HC44 474 aaPredicted RBP8.95□□□□□ -0.98
USP47-203ENST00000399455 KCNH4Q9UQ05 1017 aa8.95□□□□□ -0.98
USP47-203ENST00000399455 PLEKHG2Q9H7P9 1386 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms