RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 DCAF5Q96JK2 942 aa12.46□□□□□ -0.41
HPS4-202ENST00000398145 IQSEC3Q9UPP2 1182 aaPredicted RBP12.46□□□□□ -0.41
HPS4-202ENST00000398145 SPTY2D1Q68D10 685 aaPredicted RBP12.46□□□□□ -0.42
HPS4-202ENST00000398145 ANKS4BQ8N8V4 417 aa12.46□□□□□ -0.42
HPS4-202ENST00000398145 GOLGA5Q8TBA6 731 aa12.46□□□□□ -0.42
HPS4-202ENST00000398145 TNNC1P63316 161 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 PAK1Q13153 545 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 WHAMMP3Q1A5X7 153 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 MAPK8IP1Q9UQF2 711 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.45□□□□□ -0.42
HPS4-202ENST00000398145 ARID5AQ03989 594 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 CETN1Q12798 172 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 JAKMIP2Q96AA8 810 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 RPGRIP1Q96KN7 1286 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 PPFIA1Q13136 1202 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 C8orf74Q6P047 294 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 HEATR3Q7Z4Q2 680 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 MBD4O95243 580 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 PDIA3P30101 505 aaKnown RBP12.45□□□□□ -0.42
HPS4-202ENST00000398145 NECTIN1Q15223 517 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 MSL1Q68DK7 614 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 XAGE2Q96GT9 111 aa12.45□□□□□ -0.42
HPS4-202ENST00000398145 NSRP1Q9H0G5 558 aaKnown RBP12.45□□□□□ -0.42
HPS4-202ENST00000398145 GIGYF1O75420 1035 aaPredicted RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 MIGA1Q8NAN2 632 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 TAB2Q9NYJ8 693 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 SERTAD1Q9UHV2 236 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 A0A087WWV3 80 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 NEURL1BA8MQ27 555 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 IKBKBO14920 756 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 CYP21A2P08686 494 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 HSPD1P10809 573 aaKnown RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 HELBQ8NG08 1087 aaPredicted RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 PI4K2BQ8TCG2 481 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 MYL10Q9BUA6 226 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 PHLPP2Q6ZVD8 1323 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 BAG3O95817 575 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 PPP1R2P41236 205 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 CLCN6P51797 869 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 CCDC152Q4G0S7 254 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 ZSCAN29Q8IWY8 852 aaPredicted RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 NSUN7Q8NE18 718 aaKnown RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 ZCRB1Q8TBF4 217 aaKnown RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 LMBR1Q8WVP7 490 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 HAUS7Q99871 368 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 NOC4LQ9BVI4 516 aaKnown RBP12.44□□□□□ -0.42
HPS4-202ENST00000398145 SAR1BQ9Y6B6 198 aa12.44□□□□□ -0.42
HPS4-202ENST00000398145 LONRF3Q496Y0 759 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 SARM1Q6SZW1 724 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 CTNNBL1Q8WYA6 563 aaPredicted RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 PRM3Q9NNZ6 103 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 PCDHA5Q9Y5H7 936 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 CLIC4Q9Y696 253 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 ADCY9O60503 1353 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 UGGT1Q9NYU2 1555 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 LDHCP07864 332 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 SND1Q7KZF4 910 aaKnown RBP eCLIP12.43□□□□□ -0.42
HPS4-202ENST00000398145 CSGALNACT2Q8N6G5 542 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 TRIML1Q8N9V2 468 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 ZNF594Q96JF6 807 aaPredicted RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 NUP58Q9BVL2 599 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 MED4Q9NPJ6 270 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 TARBP1Q13395 1621 aaKnown RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 MAGEB6P1A0A0J9YX57 407 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 CCDC172P0C7W6 258 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 POTEJP0CG39 1038 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 SECISBP2LQ93073 1101 aaKnown RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 FERMT2Q96AC1 680 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 KDRP35968 1356 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 ABCA8O94911 1581 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 MPHOSPH10O00566 681 aaKnown RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 KCNQ3O43525 872 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 ADD1P35611 737 aaKnown RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 RESTQ13127 1097 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 LONRF2Q1L5Z9 754 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 NBPF6Q5VWK0 638 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 NBPF4Q96M43 638 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 PLIN2Q99541 437 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 FTOQ9C0B1 505 aaKnown RBP eCLIP12.43□□□□□ -0.42
HPS4-202ENST00000398145 RABEP2Q9H5N1 569 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 PDE11AQ9HCR9 933 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 RBM28Q9NW13 759 aaKnown RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 CDC23Q9UJX2 597 aa12.43□□□□□ -0.42
HPS4-202ENST00000398145 CPSF1Q10570 1443 aaKnown RBP12.43□□□□□ -0.42
HPS4-202ENST00000398145 CCDC151A5D8V7 595 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 SEC31AO94979 1220 aaKnown RBP12.42□□□□□ -0.42
HPS4-202ENST00000398145 SLC4A8Q2Y0W8 1093 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 SRGAP1Q7Z6B7 1085 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 GDAP1L1Q96MZ0 367 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 POLR3EQ9NVU0 708 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 KCNJ14Q9UNX9 436 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 V9GY48 417 aaPredicted RBP12.42□□□□□ -0.42
HPS4-202ENST00000398145 PNMA6AP0CW24 399 aaPredicted RBP12.42□□□□□ -0.42
HPS4-202ENST00000398145 DDIT3P35638 169 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 NAPAP54920 295 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 SLC39A14Q15043 492 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 ZNF589Q86UQ0 364 aaPredicted RBP12.42□□□□□ -0.42
HPS4-202ENST00000398145 OR8K1Q8NGG5 319 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 ANKIB1Q9P2G1 1089 aa12.42□□□□□ -0.42
HPS4-202ENST00000398145 PLCD1P51178 756 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms