RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 ZFPM1Q8IX07 1006 aa17.74■□□□□ 0.43
SEC13-208ENST00000397109 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.74■□□□□ 0.43
SEC13-208ENST00000397109 CRBNQ96SW2 442 aa17.74■□□□□ 0.43
SEC13-208ENST00000397109 LRRCC1Q9C099 1032 aa17.74■□□□□ 0.43
SEC13-208ENST00000397109 PIH1D3Q9NQM4 214 aaKnown RBP17.74■□□□□ 0.43
SEC13-208ENST00000397109 CASP8AP2Q9UKL3 1982 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 GJA5P36382 358 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 PPP4CP60510 307 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 PICALMQ13492 652 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 TTF1Q15361 905 aaPredicted RBP17.73■□□□□ 0.43
SEC13-208ENST00000397109 OTUD7BQ6GQQ9 843 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 ZNF112Q9UJU3 913 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 OTOFQ9HC10 1997 aa17.73■□□□□ 0.43
SEC13-208ENST00000397109 IDH1O75874 414 aaKnown RBP17.72■□□□□ 0.43
SEC13-208ENST00000397109 MAP3K12Q12852 859 aa17.72■□□□□ 0.43
SEC13-208ENST00000397109 ERO1BQ86YB8 467 aa17.72■□□□□ 0.43
SEC13-208ENST00000397109 CERS3Q8IU89 383 aa17.72■□□□□ 0.43
SEC13-208ENST00000397109 TEX11Q8IYF3 940 aa17.72■□□□□ 0.43
SEC13-208ENST00000397109 DCTPP1Q9H773 170 aa17.72■□□□□ 0.43
SEC13-208ENST00000397109 DDX4Q9NQI0 724 aaKnown RBP17.72■□□□□ 0.43
SEC13-208ENST00000397109 TESPA1A2RU30 521 aaPredicted RBP17.71■□□□□ 0.43
SEC13-208ENST00000397109 SPDYE5A6NIY4 337 aa17.71■□□□□ 0.43
SEC13-208ENST00000397109 CYP7A1P22680 504 aa17.71■□□□□ 0.43
SEC13-208ENST00000397109 IFNL1Q8IU54 200 aa17.71■□□□□ 0.43
SEC13-208ENST00000397109 ZKSCAN4Q969J2 545 aaPredicted RBP17.71■□□□□ 0.43
SEC13-208ENST00000397109 CFHR5Q9BXR6 569 aa17.71■□□□□ 0.43
SEC13-208ENST00000397109 SNCAIPQ9Y6H5 919 aa17.71■□□□□ 0.43
SEC13-208ENST00000397109 MAST2Q6P0Q8 1798 aa17.71■□□□□ 0.43
SEC13-208ENST00000397109 MYO5AQ9Y4I1 1855 aaKnown RBP17.7■□□□□ 0.42
SEC13-208ENST00000397109 GTF2A2P52657 109 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 MAP3K10Q02779 954 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 NOM1Q5C9Z4 860 aaKnown RBP17.7■□□□□ 0.42
SEC13-208ENST00000397109 SH3BP5LQ7L8J4 393 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 OTUD5Q96G74 571 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 BCL11AQ9H165 835 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 AATFQ9NY61 560 aaKnown RBP eCLIP17.7■□□□□ 0.42
SEC13-208ENST00000397109 ATRNL1Q5VV63 1379 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 LAMB1P07942 1786 aa17.7■□□□□ 0.42
SEC13-208ENST00000397109 DDTLA6NHG4 134 aaPredicted RBP17.69■□□□□ 0.42
SEC13-208ENST00000397109 INPP5BP32019 993 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 IRX6P78412 446 aaPredicted RBP17.69■□□□□ 0.42
SEC13-208ENST00000397109 NOL9Q5SY16 702 aaKnown RBP17.69■□□□□ 0.42
SEC13-208ENST00000397109 SH3RF3Q8TEJ3 882 aaPredicted RBP17.69■□□□□ 0.42
SEC13-208ENST00000397109 OSBPL5Q9H0X9 879 aaPredicted RBP17.69■□□□□ 0.42
SEC13-208ENST00000397109 ANTXR1Q9H6X2 564 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 NDUFB9Q9Y6M9 179 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 COL2A1P02458 1487 aaPredicted RBP17.69■□□□□ 0.42
SEC13-208ENST00000397109 TBC1D12O60347 775 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 TBC1D8O95759 1140 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 ATP5JP18859 108 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 PPATQ06203 517 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 PPIL2Q13356 520 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 MAGEB6Q8N7X4 407 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 CNKSR2Q8WXI2 1034 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 MS4A4AQ96JQ5 239 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 PCDHB15Q9Y5E8 787 aa17.69■□□□□ 0.42
SEC13-208ENST00000397109 DOCK2Q92608 1830 aa17.68■□□□□ 0.42
SEC13-208ENST00000397109 ADGRA1Q86SQ6 560 aa17.68■□□□□ 0.42
SEC13-208ENST00000397109 EXOC6Q8TAG9 804 aa17.68■□□□□ 0.42
SEC13-208ENST00000397109 DNAJC2Q99543 621 aaKnown RBP17.68■□□□□ 0.42
SEC13-208ENST00000397109 DHX36Q9H2U1 1008 aaKnown RBP17.68■□□□□ 0.42
SEC13-208ENST00000397109 PHF20L1A8MW92 1017 aa17.67■□□□□ 0.42
SEC13-208ENST00000397109 IGF2BP3O00425 579 aaKnown RBP eCLIP17.67■□□□□ 0.42
SEC13-208ENST00000397109 CETPP11597 493 aa17.67■□□□□ 0.42
SEC13-208ENST00000397109 SNAPC2Q13487 334 aa17.67■□□□□ 0.42
SEC13-208ENST00000397109 CCL15-CCL14A0A0B4J2E2 113 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 GPR25O00155 361 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 GOLIM4O00461 696 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 IRF6O14896 467 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 SMARCA5O60264 1052 aaPredicted RBP17.66■□□□□ 0.42
SEC13-208ENST00000397109 CTNND1O60716 968 aaKnown RBP17.66■□□□□ 0.42
SEC13-208ENST00000397109 CCL15Q16663 113 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 TGFBRAP1Q8WUH2 860 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 BRI3BPQ8WY22 251 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 BOLA2Q9H3K6 86 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 PICK1Q9NRD5 415 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 PI4KBQ9UBF8 816 aa17.66■□□□□ 0.42
SEC13-208ENST00000397109 SLC9C2Q5TAH2 1124 aa17.65■□□□□ 0.42
SEC13-208ENST00000397109 SCYL3Q8IZE3 742 aa17.65■□□□□ 0.42
SEC13-208ENST00000397109 GPATCH3Q96I76 525 aa17.65■□□□□ 0.42
SEC13-208ENST00000397109 HAUS7Q99871 368 aa17.65■□□□□ 0.42
SEC13-208ENST00000397109 PTPN18Q99952 460 aa17.65■□□□□ 0.42
SEC13-208ENST00000397109 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.65■□□□□ 0.42
SEC13-208ENST00000397109 PAG1Q9NWQ8 432 aa17.65■□□□□ 0.42
SEC13-208ENST00000397109 HERC5Q9UII4 1024 aaKnown RBP17.65■□□□□ 0.42
SEC13-208ENST00000397109 DYNLL1P63167 89 aaKnown RBP17.64■□□□□ 0.41
SEC13-208ENST00000397109 MAPKAPK5Q8IW41 473 aa17.64■□□□□ 0.41
SEC13-208ENST00000397109 MIGA1Q8NAN2 632 aa17.64■□□□□ 0.41
SEC13-208ENST00000397109 ZNF296Q8WUU4 475 aaPredicted RBP17.64■□□□□ 0.41
SEC13-208ENST00000397109 ZCCHC17Q9NP64 241 aaKnown RBP17.64■□□□□ 0.41
SEC13-208ENST00000397109 ECHDC1Q9NTX5 307 aa17.64■□□□□ 0.41
SEC13-208ENST00000397109 CXCL11O14625 94 aa17.63■□□□□ 0.41
SEC13-208ENST00000397109 FKTNO75072 461 aa17.63■□□□□ 0.41
SEC13-208ENST00000397109 PDE6AP16499 860 aa17.63■□□□□ 0.41
SEC13-208ENST00000397109 FLT1P17948 1338 aa17.63■□□□□ 0.41
SEC13-208ENST00000397109 DGKZQ13574 1117 aa17.63■□□□□ 0.41
SEC13-208ENST00000397109 FOXP4Q8IVH2 680 aaPredicted RBP17.63■□□□□ 0.41
SEC13-208ENST00000397109 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.63■□□□□ 0.414e-8■□□□□ 10.1
SEC13-208ENST00000397109 KCNH4Q9UQ05 1017 aa17.63■□□□□ 0.41
SEC13-208ENST00000397109 USP5P45974 858 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms