RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 MDM2Q00987 491 aaPredicted RBP11.48□□□□□ -0.57
COL17A1-203ENST00000393211 SSRP1Q08945 709 aaKnown RBP11.48□□□□□ -0.57
COL17A1-203ENST00000393211 SAFBQ15424 915 aaKnown RBP eCLIP11.48□□□□□ -0.57
COL17A1-203ENST00000393211 ARHGAP29Q52LW3 1261 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 HSP90AB3PQ58FF7 597 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 METTL24Q5JXM2 366 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 SLC9C2Q5TAH2 1124 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 CYB5R4Q7L1T6 521 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 METTL16Q86W50 562 aaKnown RBP11.48□□□□□ -0.57
COL17A1-203ENST00000393211 TBC1D10CQ8IV04 446 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 TIAM2Q8IVF5 1701 aa11.48□□□□□ -0.57
COL17A1-203ENST00000393211 GOLGA8AA7E2F4 631 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 TADA3O75528 432 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 IFNAR1P17181 557 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 ARID4AP29374 1257 aaPredicted RBP11.47□□□□□ -0.57
COL17A1-203ENST00000393211 PNOCQ13519 176 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 CHRNA2Q15822 529 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 RILPL1Q5EBL4 403 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 TMCO3Q6UWJ1 677 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 CADPS2Q86UW7 1296 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 TMEM139Q8IV31 216 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 NOSTRINQ8IVI9 506 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 CCDC34Q96HJ3 373 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 KRT23Q9C075 422 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 FOXP1Q9H334 677 aaPredicted RBP11.47□□□□□ -0.57
COL17A1-203ENST00000393211 LY9Q9HBG7 655 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 GJB4Q9NTQ9 266 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 CEP131Q9UPN4 1083 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 PPP2R2CQ9Y2T4 447 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 PCDHA5Q9Y5H7 936 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 FHOD1Q9Y613 1164 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 ARAP2Q8WZ64 1704 aa11.47□□□□□ -0.57
COL17A1-203ENST00000393211 ANKRD18BA2A2Z9 1011 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 PNMA6AP0CW24 399 aaPredicted RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 ZNF18P17022 549 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 PTPREP23469 700 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 ERCC5P28715 1186 aaPredicted RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 CDC27P30260 824 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 SARSP49591 514 aaKnown RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 TUBB4BP68371 445 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 LONRF3Q496Y0 759 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 JAKMIP3Q5VZ66 844 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 LDHAL6AQ6ZMR3 332 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 TMTC2Q8N394 836 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 GPR161Q8N6U8 529 aaKnown RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 VGLL2Q8N8G2 317 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 DPF2Q92785 391 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 BAG1Q99933 345 aaPredicted RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 UTP14AQ9BVJ6 771 aaKnown RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 FAM217BQ9NTX9 383 aaPredicted RBP11.46□□□□□ -0.57
COL17A1-203ENST00000393211 FANCLQ9NW38 375 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 PARP3Q9Y6F1 533 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 UBN2Q6ZU65 1347 aa11.46□□□□□ -0.57
COL17A1-203ENST00000393211 CCDC196A0A1B0GTZ2 297 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 PATL2C9JE40 543 aaKnown RBP11.46□□□□□ -0.58
COL17A1-203ENST00000393211 MMP1P03956 469 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 PDE6AP16499 860 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 MAP3K9P80192 1104 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 TUBB2AQ13885 445 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 MORC3Q14149 939 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 POSTNQ15063 836 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 PPP2R5BQ15173 497 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 TMEM67Q5HYA8 995 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 SPECC1LQ69YQ0 1117 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 GIGYF2Q6Y7W6 1299 aaKnown RBP11.46□□□□□ -0.58
COL17A1-203ENST00000393211 NFXL1Q6ZNB6 911 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 NUTM2AQ8IVF1 878 aaPredicted RBP11.46□□□□□ -0.58
COL17A1-203ENST00000393211 TRIM22Q8IYM9 498 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 AIFM3Q96NN9 605 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 STRBPQ96SI9 672 aaKnown RBP11.46□□□□□ -0.58
COL17A1-203ENST00000393211 TUBB2BQ9BVA1 445 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 SLC12A7Q9Y666 1083 aa11.46□□□□□ -0.58
COL17A1-203ENST00000393211 MYH3P11055 1940 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 SHANK3Q9BYB0 1731 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 ZNF532Q9HCE3 1301 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 CHD4Q14839 1912 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 TCRBV5S4A2TA0A5A2 114 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 VWA3AA6NCI4 1184 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 B4E1Z4 1266 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 RANBP6O60518 1105 aaKnown RBP11.45□□□□□ -0.58
COL17A1-203ENST00000393211 URI1O94763 535 aaPredicted RBP11.45□□□□□ -0.58
COL17A1-203ENST00000393211 PDE8BO95263 885 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 APPP05067 770 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 IL2RBP14784 551 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 GNAT2P19087 354 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 CASQ1P31415 396 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 TEX35Q5T0J7 233 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 FOXP4Q8IVH2 680 aaPredicted RBP11.45□□□□□ -0.58
COL17A1-203ENST00000393211 TTLL11Q8NHH1 800 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 SPATA20Q8TB22 786 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 CABLES1Q8TDN4 633 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 SMARCE1Q969G3 411 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 AK7Q96M32 723 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 CARD10Q9BWT7 1032 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 NAA15Q9BXJ9 866 aaKnown RBP11.45□□□□□ -0.58
COL17A1-203ENST00000393211 FBXO2Q9UK22 296 aaPredicted RBP11.45□□□□□ -0.58
COL17A1-203ENST00000393211 MAN1B1Q9UKM7 699 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 ANKRD36CQ5JPF3 1778 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 DOCK2Q92608 1830 aa11.45□□□□□ -0.58
COL17A1-203ENST00000393211 DEXIO95424 95 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms