RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 TBC1D22AQ8WUA7 517 aa18.8■□□□□ 0.6
SCN3B-202ENST00000392770 TPCN1Q9ULQ1 816 aa18.8■□□□□ 0.6
SCN3B-202ENST00000392770 MYCNP04198 464 aaPredicted RBP18.79■□□□□ 0.6
SCN3B-202ENST00000392770 PHKA1P46020 1223 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 DNAI2Q9GZS0 605 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 MYO3AQ8NEV4 1616 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 SH2D4AQ9H788 454 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 KCNJ14Q9UNX9 436 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 BICDL2A1A5D9 508 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 SDR42E1Q8WUS8 393 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 PNPLA6Q8IY17 1366 aa18.79■□□□□ 0.6
SCN3B-202ENST00000392770 CETN2P41208 172 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 GNG11P61952 73 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 TCP10Q12799 353 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 LARGE2Q8N3Y3 721 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 IFNKQ9P0W0 207 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 TRPC5Q9UL62 973 aaPredicted RBP18.78■□□□□ 0.6
SCN3B-202ENST00000392770 CLEC11AQ9Y240 323 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 GTF2IP78347 998 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 TFAP4Q01664 338 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 RBSNQ9H1K0 784 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 QTRT2Q9H974 415 aaKnown RBP18.78■□□□□ 0.6
SCN3B-202ENST00000392770 RGS12O14924 1447 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 CYP27B1O15528 508 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 NOLC1Q14978 699 aaKnown RBP eCLIP18.78■□□□□ 0.6
SCN3B-202ENST00000392770 ARHGEF10LQ9HCE6 1279 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 KCNH3Q9ULD8 1083 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 SPECC1Q5M775 1068 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 M0R2C6 588 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 PAFAH1B1P43034 410 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 PPP2R5BQ15173 497 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 ERFEQ4G0M1 354 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 TTC38Q5R3I4 469 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 ZNF274Q96GC6 653 aaPredicted RBP18.78■□□□□ 0.6
SCN3B-202ENST00000392770 LMBRD1Q9NUN5 540 aa18.78■□□□□ 0.6
SCN3B-202ENST00000392770 NRKQ7Z2Y5 1582 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 FAM13AO94988 1023 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 BRD1O95696 1058 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 POLA2Q14181 598 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 MFSD14BQ5SR56 506 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 PAF1Q8N7H5 531 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 ATP2B4P23634 1241 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 CCDC174Q6PII3 467 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 TTC12Q9H892 705 aaPredicted RBP18.77■□□□□ 0.6
SCN3B-202ENST00000392770 MRPL12P52815 198 aaKnown RBP18.77■□□□□ 0.6
SCN3B-202ENST00000392770 USP31Q70CQ4 1352 aa18.77■□□□□ 0.6
SCN3B-202ENST00000392770 hCG_1642624A0A1W2PR95 340 aa18.77■□□□□ 0.59
SCN3B-202ENST00000392770 CUTAO60888 179 aa18.77■□□□□ 0.59
SCN3B-202ENST00000392770 NF2P35240 595 aa18.77■□□□□ 0.59
SCN3B-202ENST00000392770 NLRP10Q86W26 655 aa18.77■□□□□ 0.59
SCN3B-202ENST00000392770 CGNQ9P2M7 1197 aaKnown RBP18.77■□□□□ 0.59
SCN3B-202ENST00000392770 ZSCAN10Q96SZ4 725 aaPredicted RBP18.77■□□□□ 0.59
SCN3B-202ENST00000392770 CTNND2Q9UQB3 1225 aa18.77■□□□□ 0.59
SCN3B-202ENST00000392770 PAXBP1Q9Y5B6 917 aa18.77■□□□□ 0.59
SCN3B-202ENST00000392770 FGAP02671 866 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 KIAA1210Q9ULL0 1709 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 USP17L12C9JPN9 530 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 USP17L21D6R901 530 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 MCM3P25205 808 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 NOP2P46087 812 aaKnown RBP18.76■□□□□ 0.59
SCN3B-202ENST00000392770 UBXN1Q04323 297 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 FAM182BQ5T319 152 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 SEC31BQ9NQW1 1179 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 ZBTB21Q9ULJ3 1066 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 TMCO5BA8MYB1 307 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 PTGS1P23219 599 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 KCNQ4P56696 695 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 THRAP3Q9Y2W1 955 aaKnown RBP18.76■□□□□ 0.59
SCN3B-202ENST00000392770 SV2BQ7L1I2 683 aa18.76■□□□□ 0.59
SCN3B-202ENST00000392770 MED23Q9ULK4 1368 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 PFKFB2O60825 505 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 KRT13P13646 458 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 PLCD1P51178 756 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 SEPT7Q16181 437 aaKnown RBP18.75■□□□□ 0.59
SCN3B-202ENST00000392770 MAP9Q49MG5 647 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 AKR1B10O60218 316 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 NEFHP12036 1026 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 TBC1D5Q92609 795 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 CRACR2AQ9BSW2 395 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 USP40Q9NVE5 1235 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 ZMYM1Q5SVZ6 1142 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 ZNF654Q8IZM8 581 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 MAP4K1Q92918 833 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 ZKSCAN5Q9Y2L8 839 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 PREX1Q8TCU6 1659 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 CYLC1P35663 651 aaPredicted RBP18.75■□□□□ 0.59
SCN3B-202ENST00000392770 JADE2Q9NQC1 790 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 TTF2Q9UNY4 1162 aaKnown RBP18.75■□□□□ 0.59
SCN3B-202ENST00000392770 ZNF804BA4D1E1 1349 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 PTPN12Q05209 780 aaKnown RBP18.75■□□□□ 0.59
SCN3B-202ENST00000392770 EHBP1Q8NDI1 1231 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 LZTS2Q9BRK4 669 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 ZMYM6O95789 1325 aa18.75■□□□□ 0.59
SCN3B-202ENST00000392770 IQGAP1P46940 1657 aa18.74■□□□□ 0.59
SCN3B-202ENST00000392770 ZNF589Q86UQ0 364 aaPredicted RBP18.74■□□□□ 0.59
SCN3B-202ENST00000392770 VPS54Q9P1Q0 977 aa18.74■□□□□ 0.59
SCN3B-202ENST00000392770 POLR1AO95602 1720 aaPredicted RBP18.74■□□□□ 0.59
SCN3B-202ENST00000392770 ATP10DQ9P241 1426 aa18.74■□□□□ 0.59
SCN3B-202ENST00000392770 ADCY7P51828 1080 aa18.74■□□□□ 0.59
SCN3B-202ENST00000392770 GTPBP4Q9BZE4 634 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms