RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 AKR1B15C9JRZ8 316 aaPredicted RBP18.12■□□□□ 0.49
CKAP4-201ENST00000378026 ANTXR2P58335 489 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 GRIN1Q05586 938 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 GDAP1L1Q96MZ0 367 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 RBL2Q08999 1139 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 PTPAQ15257 358 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 RESP18Q5W5W9 173 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 MICU3Q86XE3 530 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 SLC35F6Q8N357 371 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 CEP112Q8N8E3 955 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 ADGRG1Q9Y653 693 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 ANKARQ7Z5J8 1434 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 POLR2DO15514 142 aaKnown RBP18.12■□□□□ 0.49
CKAP4-201ENST00000378026 MYL10Q9BUA6 226 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 FAM204AQ9H8W3 233 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 DIP2BQ9P265 1576 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 COBLO75128 1261 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 LRRC24Q50LG9 513 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 LRRC31Q6UY01 552 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 PAXIP1Q6ZW49 1069 aaPredicted RBP18.11■□□□□ 0.49
CKAP4-201ENST00000378026 PPFIBP1Q86W92 1011 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 IQUBQ8NA54 791 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 ACRBPQ8NEB7 543 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 SERTAD1Q9UHV2 236 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 JRKLQ9Y4A0 524 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 TTC39AQ5SRH9 613 aa18.11■□□□□ 0.49
CKAP4-201ENST00000378026 CEBPAP49715 358 aaPredicted RBP18.1■□□□□ 0.49
CKAP4-201ENST00000378026 AMOTQ4VCS5 1084 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 IGSF22Q8N9C0 903 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 NKX2-3Q8TAU0 364 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 KDM3BQ7LBC6 1761 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 RFX7Q2KHR2 1363 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 LRRIQ3A6PVS8 624 aaPredicted RBP18.1■□□□□ 0.49
CKAP4-201ENST00000378026 MAGEA9P43362 315 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 SART3Q15020 963 aaKnown RBP18.1■□□□□ 0.49
CKAP4-201ENST00000378026 POSTNQ15063 836 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 SLC9C2Q5TAH2 1124 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 NOA1Q8NC60 698 aaKnown RBP18.1■□□□□ 0.49
CKAP4-201ENST00000378026 NCOA7Q8NI08 942 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 SENP2Q9HC62 589 aa18.1■□□□□ 0.49
CKAP4-201ENST00000378026 CTAGE9A4FU28 777 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 PPP6R2O75170 966 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 METAP2P50579 478 aaKnown RBP eCLIP18.09■□□□□ 0.49
CKAP4-201ENST00000378026 AKAP17AQ02040 695 aaKnown RBP18.09■□□□□ 0.49
CKAP4-201ENST00000378026 ZNF790Q6PG37 636 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 MB21D2Q8IYB1 491 aaPredicted RBP18.09■□□□□ 0.49
CKAP4-201ENST00000378026 MED15Q96RN5 788 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 NCAPH2Q6IBW4 605 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 HNRNPLLQ8WVV9 542 aaKnown RBP18.09■□□□□ 0.49
CKAP4-201ENST00000378026 MAP3K14Q99558 947 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 RABEP2Q9H5N1 569 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 EID1Q9Y6B2 187 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 CTAGE15A4D2H0 777 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 ZNF213O14771 459 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 CTAGE8P0CG41 777 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 CTAGE6Q86UF2 777 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 CTAGE4Q8IX94 777 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 CCDC82Q8N4S0 544 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 ANKRD24Q8TF21 1146 aa18.09■□□□□ 0.49
CKAP4-201ENST00000378026 HOOK1Q9UJC3 728 aaKnown RBP18.09■□□□□ 0.49
CKAP4-201ENST00000378026 FOXP2O15409 715 aa18.08■□□□□ 0.49
CKAP4-201ENST00000378026 ZNF18P17022 549 aa18.08■□□□□ 0.49
CKAP4-201ENST00000378026 TRDNQ13061 729 aa18.08■□□□□ 0.49
CKAP4-201ENST00000378026 E2F4Q16254 413 aa18.08■□□□□ 0.49
CKAP4-201ENST00000378026 ATG9AQ7Z3C6 839 aa18.08■□□□□ 0.49
CKAP4-201ENST00000378026 MED1Q15648 1581 aaPredicted RBP18.08■□□□□ 0.49
CKAP4-201ENST00000378026 CASP1P29466 404 aa18.08■□□□□ 0.48
CKAP4-201ENST00000378026 TRIM29Q14134 588 aa18.08■□□□□ 0.48
CKAP4-201ENST00000378026 NUTM2AQ8IVF1 878 aaPredicted RBP18.08■□□□□ 0.48
CKAP4-201ENST00000378026 RIN2Q8WYP3 895 aaPredicted RBP18.08■□□□□ 0.48
CKAP4-201ENST00000378026 CCDC85AQ96PX6 553 aaPredicted RBP18.08■□□□□ 0.48
CKAP4-201ENST00000378026 PUS7LQ9H0K6 701 aaKnown RBP18.08■□□□□ 0.48
CKAP4-201ENST00000378026 SEC31BQ9NQW1 1179 aa18.08■□□□□ 0.48
CKAP4-201ENST00000378026 RAB21Q9UL25 225 aa18.08■□□□□ 0.48
CKAP4-201ENST00000378026 CASP14P31944 242 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 NR1I3Q14994 352 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 MSANTD4Q8NCY6 345 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 ZNF496Q96IT1 587 aaPredicted RBP18.07■□□□□ 0.48
CKAP4-201ENST00000378026 HINFPQ9BQA5 517 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 PUS3Q9BZE2 481 aaKnown RBP18.07■□□□□ 0.48
CKAP4-201ENST00000378026 SLIT1O75093 1534 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 HEG1Q9ULI3 1381 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 PI16Q6UXB8 463 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 LOC102724159A0A0B4J2E5 919 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 POTEB2H3BUK9 544 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 APPP05067 770 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 USP5P45974 858 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 PWP2Q15269 919 aaKnown RBP18.07■□□□□ 0.48
CKAP4-201ENST00000378026 RABL6Q3YEC7 729 aaPredicted RBP18.07■□□□□ 0.48
CKAP4-201ENST00000378026 CYB5RLQ6IPT4 315 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 CTR9Q6PD62 1173 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 NFXL1Q6ZNB6 911 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 GPATCH11Q8N954 259 aa18.07■□□□□ 0.48
CKAP4-201ENST00000378026 KRI1Q8N9T8 703 aaKnown RBP18.07■□□□□ 0.48
CKAP4-201ENST00000378026 RNF40O75150 1001 aa18.06■□□□□ 0.48
CKAP4-201ENST00000378026 AFMP43652 599 aa18.06■□□□□ 0.48
CKAP4-201ENST00000378026 MDM2Q00987 491 aaPredicted RBP18.06■□□□□ 0.48
CKAP4-201ENST00000378026 SMYD4Q8IYR2 804 aaPredicted RBP18.06■□□□□ 0.48
CKAP4-201ENST00000378026 ENOX1Q8TC92 643 aaKnown RBP18.06■□□□□ 0.48
CKAP4-201ENST00000378026 ZMYND10O75800 440 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms