RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 KRT9P35527 623 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 RASIP1Q5U651 963 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 HSPA8P11142 646 aaKnown RBP12.92□□□□□ -0.34
VPS13A-205ENST00000376636 BCRP11274 1271 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 HAUS1Q96CS2 278 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 KIAA1107Q9UPP5 1409 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 NOC4LQ9BVI4 516 aaKnown RBP12.92□□□□□ -0.34
VPS13A-205ENST00000376636 CECR2Q9BXF3 1484 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 HAND2P61296 217 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 MYL5Q02045 173 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 LCA5Q86VQ0 697 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 ST5P78524 1137 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 LMNB2Q03252 620 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 JADE1Q6IE81 842 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 PROCA1Q8NCQ7 364 aaPredicted RBP12.92□□□□□ -0.34
VPS13A-205ENST00000376636 LRGUKQ96M69 825 aa12.92□□□□□ -0.34
VPS13A-205ENST00000376636 CADPSQ9ULU8 1353 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 RGS16O15492 202 aaPredicted RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 TXNDC2Q86VQ3 553 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 SLC9C1Q4G0N8 1177 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 SECISBP2LQ93073 1101 aaKnown RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 KRT12Q99456 494 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 BIRC3Q13489 604 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 SV2BQ7L1I2 683 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 C6orf229H3BNL8 230 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 ARMC9Q7Z3E5 817 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 RIPOR2Q9Y4F9 1068 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 SYNRGQ9UMZ2 1314 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 RRS1Q15050 365 aaKnown RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 PLCD1P51178 756 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 RARSP54136 660 aaKnown RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 KLHDC4Q8TBB5 520 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 NACA2Q9H009 215 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 EXOC7Q9UPT5 735 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 PEX19P40855 299 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 SNCBQ16143 134 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 FNBP4Q8N3X1 1017 aaPredicted RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 ZC3H15Q8WU90 426 aaKnown RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 ASIC2Q16515 512 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 NUCKS1Q9H1E3 243 aaKnown RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.91□□□□□ -0.34
VPS13A-205ENST00000376636 MROH2BQ7Z745 1585 aa12.91□□□□□ -0.34
VPS13A-205ENST00000376636 OGFOD1Q8N543 542 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 SYNJ2O15056 1496 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 CCDC105Q8IYK2 499 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 IGSF22Q8N9C0 903 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 PLCG2P16885 1265 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 PLS1Q14651 629 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 GRK7Q8WTQ7 553 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 MRRFQ96E11 262 aaKnown RBP12.9□□□□□ -0.34
VPS13A-205ENST00000376636 TRIM56Q9BRZ2 755 aaKnown RBP12.9□□□□□ -0.34
VPS13A-205ENST00000376636 CCDC152Q4G0S7 254 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 HAUS3Q68CZ6 603 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 EFCC1Q9HA90 598 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 SSH1Q8WYL5 1049 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 CCDC68Q9H2F9 335 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 ZNF277Q9NRM2 450 aaPredicted RBP12.9□□□□□ -0.34
VPS13A-205ENST00000376636 TNFAIP3P21580 790 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 FAM8A1Q9UBU6 413 aa12.9□□□□□ -0.34
VPS13A-205ENST00000376636 DEUP1Q05D60 604 aa12.9□□□□□ -0.35
VPS13A-205ENST00000376636 ATP2B3Q16720 1220 aa12.9□□□□□ -0.35
VPS13A-205ENST00000376636 GIMAP4Q9NUV9 329 aa12.9□□□□□ -0.35
VPS13A-205ENST00000376636 TYW1Q9NV66 732 aaKnown RBP12.9□□□□□ -0.35
VPS13A-205ENST00000376636 MMEL1Q495T6 779 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 CARD10Q9BWT7 1032 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 ATICP31939 592 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 SESN3P58005 492 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 RBM26Q5T8P6 1007 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 XRCC6P12956 609 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 NONOQ15233 471 aaKnown RBP eCLIP12.89□□□□□ -0.356e-6■■■■□ 21
VPS13A-205ENST00000376636 MCMDC2Q4G0Z9 681 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 HNRNPCL2B2RXH8 293 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 HNRNPCL1O60812 293 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 GSTA1P08263 222 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 GSTA2P09210 222 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 PPP2R5CQ13362 524 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 NXNQ6DKJ4 435 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 LDHAL6AQ6ZMR3 332 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 SLC12A5Q9H2X9 1139 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 CTNND2Q9UQB3 1225 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 NUB1Q9Y5A7 615 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 PAWRQ96IZ0 340 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 C9orf84Q5VXU9 1444 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 WDR97A6NE52 1622 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 DNM1Q05193 864 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 DCUN1D2Q6PH85 259 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 LARP6Q9BRS8 491 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 TEKT2Q9UIF3 430 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 CAPN7Q9Y6W3 813 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 KRT71Q3SY84 523 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 HGSO14964 777 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 PYGLP06737 847 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 IPO11Q9UI26 975 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 PTCD1O75127 700 aaKnown RBP12.89□□□□□ -0.35
VPS13A-205ENST00000376636 VPS41P49754 854 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 Q6ZUG5 572 aa12.89□□□□□ -0.35
VPS13A-205ENST00000376636 STRN3Q13033 797 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 CFAP70Q5T0N1 1121 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 TACO1Q9BSH4 297 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms