RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 TBC1D12O60347 775 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 SMC2O95347 1197 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 USP4Q13107 963 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 SMUG1Q53HV7 270 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 PPP4R4Q6NUP7 873 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 GIMAP8Q8ND71 665 aaPredicted RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 CCDC68Q9H2F9 335 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 TAOK3Q9H2K8 898 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 ZFYVE9O95405 1425 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 RASA4O43374 803 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 FOXD2O60548 495 aaPredicted RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 BLMP54132 1417 aaPredicted RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 PDIA5Q14554 519 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 RNF187Q5TA31 235 aaPredicted RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 HOOK3Q86VS8 718 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 PEX5LQ8IYB4 626 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 RBM33Q96EV2 1170 aaKnown RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 IRX2Q9BZI1 471 aaPredicted RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 HARSP12081 509 aaKnown RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 RDXP35241 583 aaKnown RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 GOLGA2Q08379 1002 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 ADCY1Q08828 1119 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 TERF2Q15554 542 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 RC3H1Q5TC82 1133 aaKnown RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 TMCO5AQ8N6Q1 288 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 C2orf49Q9BVC5 232 aaPredicted RBP9.1□□□□□ -0.95
USP48-203ENST00000374732 EID1Q9Y6B2 187 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 BPNT1O95861 308 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 CCNHP51946 323 aaPredicted RBP9.09□□□□□ -0.95
USP48-203ENST00000374732 UBXN2AP68543 259 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 B4GALNT3Q6L9W6 998 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 IRGCQ6NXR0 463 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 ZNF710Q8N1W2 664 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 MYRIPQ8NFW9 859 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 SPATS2LQ9NUQ6 558 aaKnown RBP9.09□□□□□ -0.95
USP48-203ENST00000374732 TMEM2Q9UHN6 1383 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 A0A1B0GUL7 405 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 LILRB3O75022 631 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 PDGFRBP09619 1106 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 DMPKQ09013 629 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 PAK2Q13177 524 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 SNX1Q13596 522 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 TSHZ3Q63HK5 1081 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 PDXDC2PQ6P474 469 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 RPAP2Q8IXW5 612 aaPredicted RBP9.09□□□□□ -0.95
USP48-203ENST00000374732 NLRP7Q8WX94 980 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 PBXIP1Q96AQ6 731 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 C1orf74Q96LT6 269 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 VRTNQ9H8Y1 702 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 KIAA1468Q9P260 1216 aa9.09□□□□□ -0.95
USP48-203ENST00000374732 ASXL1Q8IXJ9 1541 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 FAM25EA8MYX2 175 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 E2F6O75461 281 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 MTRF1O75570 445 aaKnown RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 ZNF189O75820 626 aaPredicted RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 COL6A1P12109 1028 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 PRPHP41219 470 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 MRPL28Q13084 256 aaKnown RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 RAPGEF1Q13905 1077 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 C16orf54Q6UWD8 224 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 C14orf80Q86SX3 495 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 ZNF483Q8TF39 744 aaPredicted RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 SPAG5Q96R06 1193 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 ZNHIT6Q9NWK9 470 aaKnown RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 STXBP3O00186 592 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 VAMP4O75379 141 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 SNUPNO95149 360 aaKnown RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 HOXD11P31277 338 aaPredicted RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 INPP5BP32019 993 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 MRE11P49959 708 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 DEUP1Q05D60 604 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 GNPTABQ3T906 1256 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 CCSAPQ6IQ19 270 aaPredicted RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 TAS1R3Q7RTX0 852 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 GLMNQ92990 594 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 RBM17Q96I25 401 aaKnown RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 FANCFQ9NPI8 374 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 RIC8AQ9NPQ8 531 aa9.08□□□□□ -0.96
USP48-203ENST00000374732 SCHIP1Q9P0W5 487 aaPredicted RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 MAGED1Q9Y5V3 778 aaPredicted RBP9.08□□□□□ -0.96
USP48-203ENST00000374732 GTPBP10A4D1E9 387 aaKnown RBP9.07□□□□□ -0.96
USP48-203ENST00000374732 HSPA1AP0DMV8 641 aaKnown RBP9.07□□□□□ -0.96
USP48-203ENST00000374732 HSPA1BP0DMV9 641 aaKnown RBP9.07□□□□□ -0.96
USP48-203ENST00000374732 C7P10643 843 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 GYS1P13807 737 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 GALNT17Q6IS24 598 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 PROM2Q8N271 834 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 ATP11CQ8NB49 1132 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 MIEF2Q96C03 454 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 SH3GL1Q99961 368 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 EPB41L4AQ9HCS5 686 aaPredicted RBP9.07□□□□□ -0.96
USP48-203ENST00000374732 MAPK8IP1Q9UQF2 711 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 MRPS23Q9Y3D9 190 aaKnown RBP9.07□□□□□ -0.96
USP48-203ENST00000374732 SPO11Q9Y5K1 396 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 PIK3C2GO75747 1445 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 ROBO1Q9Y6N7 1651 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 TRIM21P19474 475 aaKnown RBP9.07□□□□□ -0.96
USP48-203ENST00000374732 GUCY1B3Q02153 619 aa9.07□□□□□ -0.96
USP48-203ENST00000374732 GRM1Q13255 1194 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms