RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SYNE4Q8N205 404 aa10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 MAGEB6Q8N7X4 407 aa10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 IGDCC4Q8TDY8 1250 aa10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 CCDC85AQ96PX6 553 aaPredicted RBP10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 NAT10Q9H0A0 1025 aaKnown RBP10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 RBM28Q9NW13 759 aaKnown RBP10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 SUGT1Q9Y2Z0 365 aa10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 SLC12A7Q9Y666 1083 aa10.15□□□□□ -0.78
SNRNP40-202ENST00000373720 GOLGA8BA8MQT2 603 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 GSG1L2A8MUP6 293 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 GNPATO15228 680 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 MYO1BO43795 1136 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 PPP6R2O75170 966 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 BAG3O95817 575 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 BMP15O95972 392 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 MSNP26038 577 aaKnown RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 IARSP41252 1262 aaKnown RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 TERF1P54274 439 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 STK3Q13188 491 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 GRAPQ13588 217 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 APOA5Q6Q788 366 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 CCDC73Q6ZRK6 1079 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 TTC6Q86TZ1 520 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 PDCD7Q8N8D1 485 aaKnown RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 GRAPLQ8TC17 118 aaPredicted RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 TIGD1Q96MW7 591 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 CRNKL1Q9BZJ0 848 aaKnown RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 RBSNQ9H1K0 784 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 TNMDQ9H2S6 317 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 CLSTN2Q9H4D0 955 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 SEC31BQ9NQW1 1179 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 ORC3Q9UBD5 711 aaPredicted RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 ARPP21Q9UBL0 812 aaPredicted RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 HOOK1Q9UJC3 728 aaKnown RBP10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 BRPF3Q9ULD4 1205 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 NDUFB9Q9Y6M9 179 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 SLC4A4Q9Y6R1 1079 aa10.14□□□□□ -0.79
SNRNP40-202ENST00000373720 XDHP47989 1333 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 BTAF1O14981 1849 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 A0A0G2JS52 829 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 ORC4O43929 436 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 MBD4O95243 580 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 CTDNEP1O95476 244 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 ATP2B4P23634 1241 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 BCAMP50895 628 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 ST5P78524 1137 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 FAM160A1Q05DH4 1040 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 TMEM67Q5HYA8 995 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 TBC1D9BQ66K14 1250 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 SASS6Q6UVJ0 657 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 ZNF804AQ7Z570 1209 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 FAM200AQ8TCP9 573 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 TBC1D22AQ8WUA7 517 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 ARHGEF1Q92888 912 aaKnown RBP10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 RBM17Q96I25 401 aaKnown RBP10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 FAM84BQ96KN1 310 aaPredicted RBP10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 UBAC1Q9BSL1 405 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 BCL2L12Q9HB09 334 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 NOL7Q9UMY1 257 aaKnown RBP10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 CEP131Q9UPN4 1083 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 TAF6LQ9Y6J9 622 aa10.13□□□□□ -0.79
SNRNP40-202ENST00000373720 KLRG2A4D1S0 409 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 IFIT3O14879 490 aaKnown RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 KINO60870 393 aaKnown RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 GADD45BO75293 160 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 DDAH1O94760 285 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 DEXIO95424 95 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 CYP7A1P22680 504 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 U2AF2P26368 475 aaKnown RBP eCLIP10.12□□□□□ -0.793e-6■■■□□ 17.9
SNRNP40-202ENST00000373720 HOXA10P31260 410 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 EMP3P54852 163 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 ANTXR2P58335 489 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 PPP4CP60510 307 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 PDE4BQ07343 736 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 SSRP1Q08945 709 aaKnown RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 WTAPQ15007 396 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 CRY2Q49AN0 593 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 RILPL1Q5EBL4 403 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 CT47A1Q5JQC4 288 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 PPP4R3BQ5MIZ7 849 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 FOXD4L5Q5VV16 416 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 TTLL5Q6EMB2 1281 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 NFXL1Q6ZNB6 911 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 CNBD1Q8NA66 436 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 BICD2Q8TD16 824 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 FOXD4L4Q8WXT5 416 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 CRAMP1Q96RY5 1269 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 PYM1Q9BRP8 204 aaKnown RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 FUCA2Q9BTY2 467 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 RNF26Q9BY78 433 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 FOXP1Q9H334 677 aaPredicted RBP10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 PODXL2Q9NZ53 605 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 RAI14Q9P0K7 980 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 WWC3Q9ULE0 1092 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 HPS5Q9UPZ3 1129 aa10.12□□□□□ -0.79
SNRNP40-202ENST00000373720 NPHP1O15259 732 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 ZNF500O60304 480 aaPredicted RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 JAK2O60674 1132 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms