RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CCDC89Q8N998 374 aa8.15□□□□□ -1.11
SYNE1-208ENST00000367256 TSPYL2Q9H2G4 693 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-208ENST00000367256 GNA11P29992 359 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 MAP2K2P36507 400 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 PAK2Q13177 524 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 ZNF365Q70YC5 407 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 GSDMBQ8TAX9 411 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 RAB3IPQ96QF0 476 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 MYCBPQ99417 103 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 MAGEB6P1A0A0J9YX57 407 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 SLC8A1P32418 973 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 SMTNP53814 917 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 DENND2CQ68D51 928 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 FCHSD1Q86WN1 690 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 DUOX2Q9NRD8 1548 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 ZNF500O60304 480 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 MAP3K21Q5TCX8 1036 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 IGSF22Q8N9C0 903 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 DCTPP1Q9H773 170 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 CHPF2Q9P2E5 772 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 STK24Q9Y6E0 443 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 UHRF1BP1Q6BDS2 1440 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 ZNF75DP51815 510 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 ATP2B3Q16720 1220 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 WHAMMP3Q1A5X7 153 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 CCDC51Q96ER9 411 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 TRIM6Q9C030 488 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 SSH2Q76I76 1423 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 PLCG2P16885 1265 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 NMIQ13287 307 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 HAUS2Q9NVX0 235 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 NAA16Q6N069 864 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 CNNM4Q6P4Q7 775 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 RNF10Q8N5U6 811 aaKnown RBP8.14□□□□□ -1.11
SYNE1-208ENST00000367256 RNF34Q969K3 372 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 ATP8B2P98198 1209 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 CLSTN2Q9H4D0 955 aa8.14□□□□□ -1.11
SYNE1-208ENST00000367256 CALUO43852 315 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 HHATQ5VTY9 493 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 TCEANC2Q96MN5 208 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 PCDHB15Q9Y5E8 787 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 MUM1Q2TAK8 710 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 NUCKS1Q9H1E3 243 aaKnown RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 ADGRL1O94910 1474 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 VWA3AA6NCI4 1184 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 RFC4P35249 363 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 RUFY3Q7L099 469 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 F8W031 263 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 PARP1P09874 1014 aaKnown RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 NCAPGQ9BPX3 1015 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 DHX32Q7L7V1 743 aaKnown RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 NOC4LQ9BVI4 516 aaKnown RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 NPC1L1Q9UHC9 1359 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 HGSO14964 777 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 PI4KAP2A4QPH2 592 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 IL15P40933 162 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 ASIC2Q16515 512 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 PI4KAP1Q8N8J0 262 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 HVCN1Q96D96 273 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 USP26Q9BXU7 913 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 DISP3Q9P2K9 1392 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 TXNDC9O14530 226 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 RIOK3O14730 519 aaKnown RBP8.13□□□□□ -1.11
SYNE1-208ENST00000367256 SV2BQ7L1I2 683 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 PLIN2Q99541 437 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 ADGBQ8N7X0 1667 aa8.13□□□□□ -1.11
SYNE1-208ENST00000367256 IRX5P78411 483 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 DTHD1Q6ZMT9 781 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 SUDS3Q9H7L9 328 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 DAPK3O43293 454 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 PPFIA2O75334 1257 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 SYCE1Q8N0S2 351 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 MAGEB6Q8N7X4 407 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 MLKLQ8NB16 471 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 DACT3Q96B18 629 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 UGGT2Q9NYU1 1516 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 PRAG1Q86YV5 1406 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 BACH1O14867 736 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 PLCD1P51178 756 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 LAMC3Q9Y6N6 1575 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 CCNT1O60563 726 aaKnown RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 SECISBP2LQ93073 1101 aaKnown RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 TRAF5O00463 557 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 RNASE9P60153 205 aaKnown RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 ELF2Q15723 593 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 PKD2L1Q9P0L9 805 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 ZRANB1Q9UGI0 708 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 RAPGEF6Q8TEU7 1601 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 ATP8B1O43520 1251 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 CHMP2AO43633 222 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 SNRPA1P09661 255 aaKnown RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 ATP6V1AP38606 617 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 SLC9C2Q5TAH2 1124 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 GLT8D2Q9H1C3 349 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 ASIC3Q9UHC3 531 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 MSH6P52701 1360 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 APBA1Q02410 837 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 PNMA8AQ86V59 439 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-208ENST00000367256 OGFOD1Q8N543 542 aa8.12□□□□□ -1.11
SYNE1-208ENST00000367256 PPP4R1Q8TF05 950 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms