RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DESI2Q9BSY9 194 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 ZPR1O75312 459 aa21.89■■□□□ 1.1
CCDC88B-202ENST00000356786 ALDH3A1P30838 453 aa21.89■■□□□ 1.1
CCDC88B-202ENST00000356786 ATP11AP98196 1134 aa21.89■■□□□ 1.1
CCDC88B-202ENST00000356786 CSGALNACT2Q8N6G5 542 aa21.89■■□□□ 1.1
CCDC88B-202ENST00000356786 CHD1O14646 1710 aa21.89■■□□□ 1.1
CCDC88B-202ENST00000356786 B4E1Z4 1266 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 CD2BP2O95400 341 aaKnown RBP21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 SWAP70Q9UH65 585 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 SARNPP82979 210 aaKnown RBP21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 PPP1R12CQ9BZL4 782 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 TRAF5O00463 557 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 HGSO14964 777 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 DAAM2Q86T65 1068 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 CCDC50Q8IVM0 306 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 MIGA1Q8NAN2 632 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 DBNDD2Q9BQY9 259 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 TRIM7Q9C029 511 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 NRBP1Q9UHY1 535 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 MTUS1Q9ULD2 1270 aa21.89■■□□□ 1.09
CCDC88B-202ENST00000356786 MAGEA1P43355 309 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 CADPS2Q86UW7 1296 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 ANGEL1Q9UNK9 670 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 PAK1Q13153 545 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 POSTNQ15063 836 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 KCNA6P17658 529 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 PAK2Q13177 524 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 AEBP2Q6ZN18 517 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 KLHDC4Q8TBB5 520 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 BAIAP2L1Q9UHR4 511 aa21.88■■□□□ 1.09
CCDC88B-202ENST00000356786 EEF2P13639 858 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 GNAT2P19087 354 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 NOX5Q96PH1 765 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 EYA1Q99502 592 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 CAPN7Q9Y6W3 813 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 GIGYF1O75420 1035 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 LMNTD2Q8IXW0 634 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 TRIM31Q9BZY9 425 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 CHL1O00533 1208 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 PDE4DQ08499 809 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 ADALQ6DHV7 355 aa21.87■■□□□ 1.09
CCDC88B-202ENST00000356786 LIG3P49916 1009 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 SF3A3Q12874 501 aaKnown RBP eCLIP21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 HS2ST1Q7LGA3 356 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 MAGEB6Q8N7X4 407 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 GOLGA5Q8TBA6 731 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 STMN2Q93045 179 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 USP28Q96RU2 1077 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 PPP2R2CQ9Y2T4 447 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 SAR1BQ9Y6B6 198 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 E7EVH7 732 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 TNNI2P48788 182 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 TBX22Q9Y458 520 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 KRT40Q6A162 431 aa21.86■■□□□ 1.09
CCDC88B-202ENST00000356786 DEXIO95424 95 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 HELBQ8NG08 1087 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 WWC3Q9ULE0 1092 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 YEATS2Q9ULM3 1422 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 FERP16591 822 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 GNGT1P63211 74 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 KLHL7Q8IXQ5 586 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 CCDC63Q8NA47 563 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 BCAS4Q8TDM0 211 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 TMEM87BQ96K49 555 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 TSNARE1Q96NA8 513 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 ACTN4O43707 911 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 USP37Q86T82 979 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 PPP1R2P41236 205 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 CCDC152Q4G0S7 254 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 TNNI3KQ59H18 835 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 FPGT-TNNI3KV9GXZ4 949 aa21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 IBTKQ9P2D0 1353 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-202ENST00000356786 MAGEB6P1A0A0J9YX57 407 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 C6orf229H3BNL8 230 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 NUP58Q9BVL2 599 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 PNOCQ13519 176 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 CHRNA2Q15822 529 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 WHAMMP3Q1A5X7 153 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 BEND3Q5T5X7 828 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 GPIHBP1Q8IV16 184 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 PREX2Q70Z35 1606 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 BICD1Q96G01 975 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 RPGRIP1Q96KN7 1286 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 PLCD1P51178 756 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 DCAF17Q5H9S7 520 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 MYSM1Q5VVJ2 828 aa21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 DDX41Q9UJV9 622 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-202ENST00000356786 VSIG1Q86XK7 387 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 PHKBQ93100 1093 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 ZFYVE9O95405 1425 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 CEP104O60308 925 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 GNA11P29992 359 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 ATP6V1AP38606 617 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 STAMQ92783 540 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 NAP1L3Q99457 506 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 FLT4P35916 1363 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 SLC9C1Q4G0N8 1177 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 SV2BQ7L1I2 683 aa21.83■■□□□ 1.09
CCDC88B-202ENST00000356786 MYCBPQ99417 103 aaPredicted RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms