RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 TIGD1Q96MW7 591 aa25.64■■□□□ 1.7
UPF3A-201ENST00000351487 NEMFO60524 1076 aa25.64■■□□□ 1.69
UPF3A-201ENST00000351487 MTERF4Q7Z6M4 381 aaKnown RBP25.64■■□□□ 1.69
UPF3A-201ENST00000351487 JMYQ8N9B5 988 aa25.64■■□□□ 1.69
UPF3A-201ENST00000351487 CCDC69A6NI79 296 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 SLC3A2P08195 630 aaKnown RBP25.63■■□□□ 1.69
UPF3A-201ENST00000351487 RBM6P78332 1123 aaKnown RBP25.63■■□□□ 1.69
UPF3A-201ENST00000351487 MAP3K14Q99558 947 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 FAM237AA0A1B0GTK4 181 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 FMNL1O95466 1100 aaPredicted RBP25.63■■□□□ 1.69
UPF3A-201ENST00000351487 IFNAR1P17181 557 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 TRIM29Q14134 588 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 DPCR1Q3MIW9 517 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 MYL10Q9BUA6 226 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 HPSEQ9Y251 543 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 SLC4A4Q9Y6R1 1079 aa25.63■■□□□ 1.69
UPF3A-201ENST00000351487 ZNF804BA4D1E1 1349 aa25.62■■□□□ 1.69
UPF3A-201ENST00000351487 PRKAB2O43741 272 aa25.62■■□□□ 1.69
UPF3A-201ENST00000351487 TDO2P48775 406 aa25.62■■□□□ 1.69
UPF3A-201ENST00000351487 CHAF1AQ13111 956 aaPredicted RBP25.62■■□□□ 1.69
UPF3A-201ENST00000351487 RCAN1P53805 252 aa25.61■■□□□ 1.69
UPF3A-201ENST00000351487 SSRP1Q08945 709 aaKnown RBP25.61■■□□□ 1.69
UPF3A-201ENST00000351487 ZRSR1Q15695 479 aaKnown RBP25.61■■□□□ 1.69
UPF3A-201ENST00000351487 LRRC8AQ8IWT6 810 aa25.61■■□□□ 1.69
UPF3A-201ENST00000351487 WASF1Q92558 559 aa25.61■■□□□ 1.69
UPF3A-201ENST00000351487 CDC5LQ99459 802 aaKnown RBP25.61■■□□□ 1.69
UPF3A-201ENST00000351487 ZNF652Q9Y2D9 606 aa25.61■■□□□ 1.69
UPF3A-201ENST00000351487 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.61■■□□□ 1.69
UPF3A-201ENST00000351487 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.61■■□□□ 1.69
UPF3A-201ENST00000351487 MARCKSP29966 332 aaPredicted RBP25.6■■□□□ 1.69
UPF3A-201ENST00000351487 NLRP12P59046 1061 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 GNL2Q13823 731 aaKnown RBP25.6■■□□□ 1.69
UPF3A-201ENST00000351487 SART3Q15020 963 aaKnown RBP25.6■■□□□ 1.69
UPF3A-201ENST00000351487 SPATA31A5Q5VU36 1347 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 SPATA31A7Q8IWB4 1347 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 SCN7AQ01118 1682 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 A0A0G2JS52 829 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 RNF41Q9H4P4 317 aaPredicted RBP25.6■■□□□ 1.69
UPF3A-201ENST00000351487 LRP2BPQ9P2M1 347 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 CACNA1SQ13698 1873 aa25.6■■□□□ 1.69
UPF3A-201ENST00000351487 CLEC4GQ6UXB4 293 aa25.59■■□□□ 1.69
UPF3A-201ENST00000351487 SMARCC1Q92922 1105 aaPredicted RBP25.59■■□□□ 1.69
UPF3A-201ENST00000351487 SLC26A6Q9BXS9 759 aa25.59■■□□□ 1.69
UPF3A-201ENST00000351487 SYKP43405 635 aa25.59■■□□□ 1.69
UPF3A-201ENST00000351487 SHC4Q6S5L8 630 aa25.59■■□□□ 1.69
UPF3A-201ENST00000351487 ADAMTS2O95450 1211 aa25.58■■□□□ 1.69
UPF3A-201ENST00000351487 WTAPQ15007 396 aa25.58■■□□□ 1.69
UPF3A-201ENST00000351487 BARGINQ6ZT62 677 aa25.58■■□□□ 1.69
UPF3A-201ENST00000351487 TMTC2Q8N394 836 aa25.58■■□□□ 1.69
UPF3A-201ENST00000351487 RTN1Q16799 776 aa25.57■■□□□ 1.68
UPF3A-201ENST00000351487 RESP18Q5W5W9 173 aa25.57■■□□□ 1.68
UPF3A-201ENST00000351487 TUBE1Q9UJT0 475 aa25.57■■□□□ 1.68
UPF3A-201ENST00000351487 ANAPC4Q9UJX5 808 aa25.57■■□□□ 1.68
UPF3A-201ENST00000351487 COL1A1P02452 1464 aaPredicted RBP25.56■■□□□ 1.68
UPF3A-201ENST00000351487 CUTAO60888 179 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 MIGA1Q8NAN2 632 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 FBXW7Q969H0 707 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 MYH6P13533 1939 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 ERICH2A1L162 156 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 UBE2Q2LH0YL09 131 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 MMP1P03956 469 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 PPARAQ07869 468 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 SF3B3Q15393 1217 aaKnown RBP25.56■■□□□ 1.68
UPF3A-201ENST00000351487 RRP12Q5JTH9 1297 aaKnown RBP25.56■■□□□ 1.68
UPF3A-201ENST00000351487 NOSTRINQ8IVI9 506 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 TRIM22Q8IYM9 498 aa25.56■■□□□ 1.68
UPF3A-201ENST00000351487 CCDC196A0A1B0GTZ2 297 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 CYP7A1P22680 504 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 UBE4AQ14139 1066 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 ADGRA1Q86SQ6 560 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 NBPF11Q86T75 865 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 TAF1P21675 1872 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 GSDMDP57764 484 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 NCAPHQ15003 741 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 OSBPL5Q9H0X9 879 aaPredicted RBP25.55■■□□□ 1.68
UPF3A-201ENST00000351487 GNL3LQ9NVN8 582 aaKnown RBP25.55■■□□□ 1.68
UPF3A-201ENST00000351487 IMPACTQ9P2X3 320 aa25.55■■□□□ 1.68
UPF3A-201ENST00000351487 RIOK3O14730 519 aaKnown RBP25.54■■□□□ 1.68
UPF3A-201ENST00000351487 IKBKBO14920 756 aa25.54■■□□□ 1.68
UPF3A-201ENST00000351487 ANKRD18AQ8IVF6 992 aa25.54■■□□□ 1.68
UPF3A-201ENST00000351487 TOMM22Q9NS69 142 aa25.54■■□□□ 1.68
UPF3A-201ENST00000351487 DUOX1Q9NRD9 1551 aa25.54■■□□□ 1.68
UPF3A-201ENST00000351487 SMTNL1A8MU46 457 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 BIN1O00499 593 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 GUCY1A2P33402 732 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 ARID5BQ14865 1188 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 ZKSCAN3Q9BRR0 538 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 FOXP1Q9H334 677 aaPredicted RBP25.53■■□□□ 1.68
UPF3A-201ENST00000351487 BSDC1Q9NW68 430 aaPredicted RBP25.53■■□□□ 1.68
UPF3A-201ENST00000351487 RGL2O15211 777 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 DEXIO95424 95 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 TPM4P67936 248 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 CCZ1BP86790 482 aa25.53■■□□□ 1.68
UPF3A-201ENST00000351487 CCZ1P86791 482 aaPredicted RBP25.53■■□□□ 1.68
UPF3A-201ENST00000351487 SAFBQ15424 915 aaKnown RBP eCLIP25.53■■□□□ 1.68
UPF3A-201ENST00000351487 C16orf45Q96MC5 204 aaPredicted RBP25.53■■□□□ 1.68
UPF3A-201ENST00000351487 DLEC1Q9Y238 1755 aa25.52■■□□□ 1.68
UPF3A-201ENST00000351487 MAGEB6P1A0A0J9YX57 407 aa25.52■■□□□ 1.68
UPF3A-201ENST00000351487 ZNF654Q8IZM8 581 aa25.52■■□□□ 1.68
UPF3A-201ENST00000351487 CRACR2BQ8N4Y2 399 aaPredicted RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms