RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ANAPC4Q9UJX5 808 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 ATP6V1DQ9Y5K8 247 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 SYCE3A1L190 88 aa15□□□□□ -0.01
CLK3-201ENST00000345005 B4E1Z4 1266 aa15□□□□□ -0.01
CLK3-201ENST00000345005 CTDSPL2Q05D32 466 aa15□□□□□ -0.01
CLK3-201ENST00000345005 SCRN1Q12765 414 aa15□□□□□ -0.01
CLK3-201ENST00000345005 TBC1D22AQ8WUA7 517 aa15□□□□□ -0.01
CLK3-201ENST00000345005 SDR42E1Q8WUS8 393 aa15□□□□□ -0.01
CLK3-201ENST00000345005 ATP8A2Q9NTI2 1148 aa15□□□□□ -0.01
CLK3-201ENST00000345005 TMEM63CQ9P1W3 806 aa15□□□□□ -0.01
CLK3-201ENST00000345005 JAG2Q9Y219 1238 aa15□□□□□ -0.01
CLK3-201ENST00000345005 R3HCC1Q9Y3T6 440 aaKnown RBP15□□□□□ -0.01
CLK3-201ENST00000345005 LAMB1P07942 1786 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 PPARAQ07869 468 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 TMEM87AQ8NBN3 555 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 COA1Q9GZY4 146 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 AATFQ9NY61 560 aaKnown RBP eCLIP14.99□□□□□ -0.01
CLK3-201ENST00000345005 NAP1L2Q9ULW6 460 aaPredicted RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 ANGEL1Q9UNK9 670 aaKnown RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 KIF3AQ9Y496 699 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 SLX4Q8IY92 1834 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 DHX16O60231 1041 aaKnown RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 HMGN5P82970 282 aaKnown RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 KIAA2012Q0VF49 1180 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 R3HDM1Q15032 1099 aaKnown RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 DPP8Q6V1X1 898 aaPredicted RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 CYB5R4Q7L1T6 521 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 CERS3Q8IU89 383 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 SMARCC2Q8TAQ2 1214 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 MTA3Q9BTC8 594 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 ZC3H12CQ9C0D7 883 aaKnown RBP14.99□□□□□ -0.01
CLK3-201ENST00000345005 MTMR6Q9Y217 621 aa14.99□□□□□ -0.01
CLK3-201ENST00000345005 NEDD4P46934 1319 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 FAM205AQ6ZU69 1335 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 CDK5RAP2Q96SN8 1893 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 MINDY4BA8MYZ0 360 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 BAG3O95817 575 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 F13A1P00488 732 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 PTMAP06454 111 aaKnown RBP14.98□□□□□ -0.01
CLK3-201ENST00000345005 TPM3P06753 285 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 PCP11498 1178 aaKnown RBP14.98□□□□□ -0.01
CLK3-201ENST00000345005 SLF2Q8IX21 1173 aa14.98□□□□□ -0.01
CLK3-201ENST00000345005 NOL10Q9BSC4 688 aaKnown RBP14.98□□□□□ -0.01
CLK3-201ENST00000345005 GPHNQ9NQX3 736 aaPredicted RBP14.98□□□□□ -0.01
CLK3-201ENST00000345005 KLF18A0A0U1RQI7 1052 aa14.97□□□□□ -0.01
CLK3-201ENST00000345005 SH2B2O14492 632 aaPredicted RBP14.97□□□□□ -0.01
CLK3-201ENST00000345005 CCT2P78371 535 aaKnown RBP14.97□□□□□ -0.01
CLK3-201ENST00000345005 NSUN7Q8NE18 718 aaKnown RBP14.97□□□□□ -0.01
CLK3-201ENST00000345005 CNKSR1Q969H4 720 aa14.97□□□□□ -0.01
CLK3-201ENST00000345005 PRIMPOLQ96LW4 560 aa14.97□□□□□ -0.01
CLK3-201ENST00000345005 EYA3Q99504 573 aa14.97□□□□□ -0.01
CLK3-201ENST00000345005 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.97□□□□□ -0.01
CLK3-201ENST00000345005 ZSWIM5Q9P217 1185 aa14.97□□□□□ -0.01
CLK3-201ENST00000345005 VPS37CA5D8V6 355 aaPredicted RBP14.96□□□□□ -0.01
CLK3-201ENST00000345005 RIMBP2O15034 1052 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 KDM4AO75164 1064 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 LIFRP42702 1097 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 PPP4CP60510 307 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 SART3Q15020 963 aaKnown RBP14.96□□□□□ -0.01
CLK3-201ENST00000345005 SMAP1Q8IYB5 467 aaPredicted RBP14.96□□□□□ -0.01
CLK3-201ENST00000345005 IGDCC4Q8TDY8 1250 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 SLC16A10Q8TF71 515 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 INCENPQ9NQS7 918 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 TOMM22Q9NS69 142 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 RBM27Q9P2N5 1060 aaKnown RBP14.96□□□□□ -0.01
CLK3-201ENST00000345005 UQCRHLA0A096LP55 91 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 JAK2O60674 1132 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 UQCRHP07919 91 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 SBK1Q52WX2 424 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 TMEM67Q5HYA8 995 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 MFSD14BQ5SR56 506 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 CTR9Q6PD62 1173 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 DCP1AQ9NPI6 582 aaPredicted RBP14.96□□□□□ -0.01
CLK3-201ENST00000345005 PRDM4Q9UKN5 801 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 SUGT1Q9Y2Z0 365 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 TACC3Q9Y6A5 838 aa14.96□□□□□ -0.01
CLK3-201ENST00000345005 DLEC1Q9Y238 1755 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 MROH7-TTC4A0A0A0MT08 1334 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 GOLGA8BA8MQT2 603 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 IFIT3O14879 490 aaKnown RBP14.95□□□□□ -0.02
CLK3-201ENST00000345005 CTDNEP1O95476 244 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 SLC3A2P08195 630 aaKnown RBP14.95□□□□□ -0.02
CLK3-201ENST00000345005 RRP12Q5JTH9 1297 aaKnown RBP14.95□□□□□ -0.02
CLK3-201ENST00000345005 CCDC183Q5T5S1 534 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 SGMS1Q86VZ5 419 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 TMTC2Q8N394 836 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 ESR2Q92731 530 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 NCOA5Q9HCD5 579 aaKnown RBP14.95□□□□□ -0.02
CLK3-201ENST00000345005 ARPP21Q9UBL0 812 aaPredicted RBP14.95□□□□□ -0.02
CLK3-201ENST00000345005 NAV1Q8NEY1 1877 aa14.95□□□□□ -0.02
CLK3-201ENST00000345005 ERICH2A1L162 156 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 PTPDC1A2A3K4 754 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 USP17L12C9JPN9 530 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 USP17L21D6R901 530 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 G3V3G9 751 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 DTNBO60941 627 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 GRIK5Q16478 980 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 DCAF8Q5TAQ9 597 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 OLFM4Q6UX06 510 aa14.94□□□□□ -0.02
CLK3-201ENST00000345005 DDX11Q96FC9 970 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms