RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 DPCR1Q3MIW9 517 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 SGMS1Q86VZ5 419 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 GUCY1A2P33402 732 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 AXDND1Q5T1B0 1012 aaPredicted RBP17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 CDC5LQ99459 802 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 CNNM2Q9H8M5 875 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 KIAA1468Q9P260 1216 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 ZNF652Q9Y2D9 606 aa17.26■□□□□ 0.35
VIPAS39-202ENST00000343765 SSRP1Q08945 709 aaKnown RBP17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 ARID5BQ14865 1188 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 CCDC24Q8N4L8 307 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 KRT23Q9C075 422 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 SPATA31A5Q5VU36 1347 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 SPATA31A7Q8IWB4 1347 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 AHDC1Q5TGY3 1603 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 ARAP2Q8WZ64 1704 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 SLC3A2P08195 630 aaKnown RBP17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 GTF2E1P29083 439 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 SLC39A14Q15043 492 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 ANKRD18AQ8IVF6 992 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 NUP133Q8WUM0 1156 aa17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 CACTINQ8WUQ7 758 aaKnown RBP17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 COL22A1Q8NFW1 1626 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-202ENST00000343765 LIFRP42702 1097 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 WTAPQ15007 396 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 FAM98CQ17RN3 349 aaKnown RBP17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 FILIP1Q7Z7B0 1213 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 LINC00116Q8NCU8 138 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 CLIC6Q96NY7 704 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 MYRIPQ8NFW9 859 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 NAT10Q9H0A0 1025 aaKnown RBP17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 KCNJ14Q9UNX9 436 aa17.24■□□□□ 0.35
VIPAS39-202ENST00000343765 DYNC1I1O14576 645 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 GNAT2P19087 354 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 SART3Q15020 963 aaKnown RBP17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 SARM1Q6SZW1 724 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 STAG1Q8WVM7 1258 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 ARID3AQ99856 593 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 PHLPP1O60346 1717 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 ERICH2A1L162 156 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 CMA1P23946 247 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 RTN1Q16799 776 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 PNPLA7Q6ZV29 1317 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 PPARAQ07869 468 aa17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.23■□□□□ 0.35
VIPAS39-202ENST00000343765 CYP2D7A0A087X1C5 515 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 MAGEB6P1A0A0J9YX57 407 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 SYKP43405 635 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 PRIMPOLQ96LW4 560 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 C16orf45Q96MC5 204 aaPredicted RBP17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 RTL9Q8NET4 1388 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 BTBD18B2RXH4 712 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 FMNL1O95466 1100 aaPredicted RBP17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 DYNLL1P63167 89 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 SHC4Q6S5L8 630 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 SLC51AQ86UW1 340 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 SMARCC1Q92922 1105 aaPredicted RBP17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 UBAC1Q9BSL1 405 aa17.22■□□□□ 0.35
VIPAS39-202ENST00000343765 CDC25BP30305 580 aa17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 PTPAQ15257 358 aa17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 SPECC1Q5M775 1068 aa17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 CELF1Q92879 486 aaKnown RBP17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 MRFAP1L1Q96HT8 127 aa17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 MAP3K14Q99558 947 aa17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 DOCK2Q92608 1830 aa17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 GNL3LQ9NVN8 582 aaKnown RBP17.21■□□□□ 0.35
VIPAS39-202ENST00000343765 TAF1P21675 1872 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 IFNAR1P17181 557 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 ATP2B1P20020 1258 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 U2AF2P26368 475 aaKnown RBP eCLIP17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 KLRK1P26718 216 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 TBC1D9BQ66K14 1250 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 TRIM22Q8IYM9 498 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 COL1A1P02452 1464 aaPredicted RBP17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 PRDM1O75626 825 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 CHAF1AQ13111 956 aaPredicted RBP17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 CAVIN4Q5BKX8 364 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 DIS3L2Q8IYB7 885 aaKnown RBP17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 JMYQ8N9B5 988 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 RNF41Q9H4P4 317 aaPredicted RBP17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 MINPP1Q9UNW1 487 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 BCL9LQ86UU0 1499 aa17.2■□□□□ 0.34
VIPAS39-202ENST00000343765 NRAPQ86VF7 1730 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 SMC2O95347 1197 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 NOSTRINQ8IVI9 506 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 ZNF654Q8IZM8 581 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 NR5A1Q13285 461 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 PNOCQ13519 176 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 SAFBQ15424 915 aaKnown RBP eCLIP17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 LRRC8AQ8IWT6 810 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 SRP68Q9UHB9 627 aaKnown RBP17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 CHD4Q14839 1912 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 ZNF804BA4D1E1 1349 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 TNKSO95271 1327 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 STK36Q9NRP7 1315 aa17.19■□□□□ 0.34
VIPAS39-202ENST00000343765 hCG_1642624A0A1W2PR95 340 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 PPP6R2O75170 966 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 NLRP12P59046 1061 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 JAG2Q9Y219 1238 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms