RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ERO1AQ96HE7 468 aa18.81■□□□□ 0.6
VAPA-201ENST00000340541 LRRCC1Q9C099 1032 aa18.81■□□□□ 0.6
VAPA-201ENST00000340541 LRP2BPQ9P2M1 347 aa18.81■□□□□ 0.6
VAPA-201ENST00000340541 PDE4DIPQ5VU43 2346 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 SMARCA5O60264 1052 aaPredicted RBP18.8■□□□□ 0.6
VAPA-201ENST00000340541 IFIT2P09913 472 aaKnown RBP18.8■□□□□ 0.6
VAPA-201ENST00000340541 RHBDL3P58872 404 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.8■□□□□ 0.6
VAPA-201ENST00000340541 FAM151AQ8WW52 585 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 OPTNQ96CV9 577 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 MS4A4AQ96JQ5 239 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 IDI2Q9BXS1 227 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 ANTXR1Q9H6X2 564 aa18.8■□□□□ 0.6
VAPA-201ENST00000340541 WDHD1O75717 1129 aaPredicted RBP18.79■□□□□ 0.6
VAPA-201ENST00000340541 LDHCP07864 332 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 GTF2A2P52657 109 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 GSTO1P78417 241 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 OTOP1Q7RTM1 612 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 ADGRA1Q86SQ6 560 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 ZFPM1Q8IX07 1006 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.79■□□□□ 0.6
VAPA-201ENST00000340541 PTPN18Q99952 460 aa18.79■□□□□ 0.6
VAPA-201ENST00000340541 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.79■□□□□ 0.6
VAPA-201ENST00000340541 IGSF3O75054 1194 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 RGS3P49796 1198 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 TCP10Q12799 353 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 CRHR2Q13324 411 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.78■□□□□ 0.6
VAPA-201ENST00000340541 ELP3Q9H9T3 547 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 DDX4Q9NQI0 724 aaKnown RBP18.78■□□□□ 0.6
VAPA-201ENST00000340541 TRIM17Q9Y577 477 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
VAPA-201ENST00000340541 CSADQ9Y600 493 aa18.78■□□□□ 0.6
VAPA-201ENST00000340541 ENTPD3O75355 529 aa18.77■□□□□ 0.6
VAPA-201ENST00000340541 SP3Q02447 781 aa18.77■□□□□ 0.6
VAPA-201ENST00000340541 ARHGEF6Q15052 776 aa18.77■□□□□ 0.6
VAPA-201ENST00000340541 NAA16Q6N069 864 aaPredicted RBP18.77■□□□□ 0.6
VAPA-201ENST00000340541 BCL11AQ9H165 835 aa18.77■□□□□ 0.6
VAPA-201ENST00000340541 VGLL4Q14135 290 aa18.76■□□□□ 0.59
VAPA-201ENST00000340541 PRPF38BQ5VTL8 546 aaKnown RBP18.76■□□□□ 0.59
VAPA-201ENST00000340541 SH3BP5LQ7L8J4 393 aa18.76■□□□□ 0.59
VAPA-201ENST00000340541 PTPN22Q9Y2R2 807 aa18.76■□□□□ 0.59
VAPA-201ENST00000340541 ATRNL1Q5VV63 1379 aa18.76■□□□□ 0.59
VAPA-201ENST00000340541 CDK5RAP2Q96SN8 1893 aa18.75■□□□□ 0.59
VAPA-201ENST00000340541 AK9Q5TCS8 1911 aa18.75■□□□□ 0.59
VAPA-201ENST00000340541 MAP4K4O95819 1239 aaPredicted RBP18.75■□□□□ 0.59
VAPA-201ENST00000340541 ATP5JP18859 108 aa18.75■□□□□ 0.59
VAPA-201ENST00000340541 PPP4CP60510 307 aa18.75■□□□□ 0.59
VAPA-201ENST00000340541 EFCC1Q9HA90 598 aa18.75■□□□□ 0.59
VAPA-201ENST00000340541 ZFYVE28Q9HCC9 887 aa18.75■□□□□ 0.59
VAPA-201ENST00000340541 ZCCHC17Q9NP64 241 aaKnown RBP18.75■□□□□ 0.59
VAPA-201ENST00000340541 SPDYE5A6NIY4 337 aa18.74■□□□□ 0.59
VAPA-201ENST00000340541 NPM3O75607 178 aaKnown RBP18.74■□□□□ 0.59
VAPA-201ENST00000340541 IDH1O75874 414 aaKnown RBP18.74■□□□□ 0.59
VAPA-201ENST00000340541 HDAC1Q13547 482 aaPredicted RBP18.74■□□□□ 0.59
VAPA-201ENST00000340541 AAMPQ13685 434 aa18.74■□□□□ 0.59
VAPA-201ENST00000340541 DCAF15Q66K64 600 aa18.74■□□□□ 0.59
VAPA-201ENST00000340541 ERO1BQ86YB8 467 aa18.74■□□□□ 0.59
VAPA-201ENST00000340541 EXOC6Q8TAG9 804 aa18.74■□□□□ 0.59
VAPA-201ENST00000340541 SH3RF3Q8TEJ3 882 aaPredicted RBP18.74■□□□□ 0.59
VAPA-201ENST00000340541 FOCADQ5VW36 1801 aa18.74■□□□□ 0.59
VAPA-201ENST00000340541 CCL15-CCL14A0A0B4J2E2 113 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 CETPP11597 493 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 PICALMQ13492 652 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 CCL15Q16663 113 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 MIGA2Q7L4E1 593 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 CD99L2Q8TCZ2 262 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 BRI3BPQ8WY22 251 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 EDC3Q96F86 508 aaKnown RBP18.73■□□□□ 0.59
VAPA-201ENST00000340541 BOLA2Q9H3K6 86 aa18.73■□□□□ 0.59
VAPA-201ENST00000340541 AATFQ9NY61 560 aaKnown RBP eCLIP18.73■□□□□ 0.59
VAPA-201ENST00000340541 COL2A1P02458 1487 aaPredicted RBP18.72■□□□□ 0.59
VAPA-201ENST00000340541 DDTLA6NHG4 134 aaPredicted RBP18.72■□□□□ 0.59
VAPA-201ENST00000340541 GOLIM4O00461 696 aa18.72■□□□□ 0.59
VAPA-201ENST00000340541 CYP7A1P22680 504 aa18.72■□□□□ 0.59
VAPA-201ENST00000340541 TTF1Q15361 905 aaPredicted RBP18.72■□□□□ 0.59
VAPA-201ENST00000340541 MAGEB6Q8N7X4 407 aa18.72■□□□□ 0.59
VAPA-201ENST00000340541 DNAJC2Q99543 621 aaKnown RBP18.72■□□□□ 0.59
VAPA-201ENST00000340541 HAUS7Q99871 368 aa18.72■□□□□ 0.59
VAPA-201ENST00000340541 BAG3O95817 575 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 MAP3K10Q02779 954 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 MAP3K12Q12852 859 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 TAF1CQ15572 869 aaPredicted RBP18.71■□□□□ 0.59
VAPA-201ENST00000340541 TMED8Q6PL24 325 aaPredicted RBP18.71■□□□□ 0.59
VAPA-201ENST00000340541 TEX11Q8IYF3 940 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 CNKSR2Q8WXI2 1034 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 ARMC5Q96C12 935 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 OTUD5Q96G74 571 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 WRNIP1Q96S55 665 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 ZNF341Q9BYN7 854 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 ECHDC1Q9NTX5 307 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 ZNF112Q9UJU3 913 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 SNCAIPQ9Y6H5 919 aa18.71■□□□□ 0.59
VAPA-201ENST00000340541 SLURP2P0DP57 97 aa18.7■□□□□ 0.58
VAPA-201ENST00000340541 DYNLL1P63167 89 aaKnown RBP18.7■□□□□ 0.58
VAPA-201ENST00000340541 PPATQ06203 517 aa18.7■□□□□ 0.58
VAPA-201ENST00000340541 PPIL2Q13356 520 aa18.7■□□□□ 0.58
VAPA-201ENST00000340541 SNAPC2Q13487 334 aa18.7■□□□□ 0.58
VAPA-201ENST00000340541 ZKSCAN4Q969J2 545 aaPredicted RBP18.7■□□□□ 0.58
VAPA-201ENST00000340541 NOL10Q9BSC4 688 aaKnown RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms