RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CDK5RAP2Q96SN8 1893 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 FAM205AQ6ZU69 1335 aa15.73■□□□□ 0.11
HMGB1-202ENST00000339872 IFIT3O14879 490 aaKnown RBP15.72■□□□□ 0.11
HMGB1-202ENST00000339872 BAG3O95817 575 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 HMGN5P82970 282 aaKnown RBP15.72■□□□□ 0.11
HMGB1-202ENST00000339872 DOK7Q18PE1 504 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 IGDCC4Q8TDY8 1250 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 CNKSR1Q969H4 720 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 EYA3Q99504 573 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 LY9Q9HBG7 655 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 HPS5Q9UPZ3 1129 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 ATP6V1DQ9Y5K8 247 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 DLEC1Q9Y238 1755 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 G3V3G9 751 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 DCAF8Q5TAQ9 597 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 NFXL1Q6ZNB6 911 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 SH3RF3Q8TEJ3 882 aaPredicted RBP15.72■□□□□ 0.11
HMGB1-202ENST00000339872 ZKSCAN3Q9BRR0 538 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 SENP2Q9HC62 589 aa15.72■□□□□ 0.11
HMGB1-202ENST00000339872 PPFIA3O75145 1194 aa15.71■□□□□ 0.11
HMGB1-202ENST00000339872 DEKP35659 375 aaKnown RBP15.71■□□□□ 0.11
HMGB1-202ENST00000339872 USP5P45974 858 aa15.71■□□□□ 0.11
HMGB1-202ENST00000339872 RTFDC1Q9BY42 306 aaPredicted RBP15.71■□□□□ 0.11
HMGB1-202ENST00000339872 ARPP21Q9UBL0 812 aaPredicted RBP15.71■□□□□ 0.11
HMGB1-202ENST00000339872 DDX49Q9Y6V7 483 aaKnown RBP15.71■□□□□ 0.11
HMGB1-202ENST00000339872 C10orf71Q711Q0 1435 aa15.71■□□□□ 0.11
HMGB1-202ENST00000339872 DHX16O60231 1041 aaKnown RBP15.71■□□□□ 0.1
HMGB1-202ENST00000339872 SART3Q15020 963 aaKnown RBP15.71■□□□□ 0.1
HMGB1-202ENST00000339872 APOA5Q6Q788 366 aa15.71■□□□□ 0.1
HMGB1-202ENST00000339872 ESR2Q92731 530 aa15.71■□□□□ 0.1
HMGB1-202ENST00000339872 KIF3AQ9Y496 699 aa15.71■□□□□ 0.1
HMGB1-202ENST00000339872 BTDP43251 543 aa15.7■□□□□ 0.1
HMGB1-202ENST00000339872 EVX2Q03828 476 aa15.7■□□□□ 0.1
HMGB1-202ENST00000339872 FERMT3Q86UX7 667 aa15.7■□□□□ 0.1
HMGB1-202ENST00000339872 SGMS1Q86VZ5 419 aa15.7■□□□□ 0.1
HMGB1-202ENST00000339872 MICU3Q86XE3 530 aa15.7■□□□□ 0.1
HMGB1-202ENST00000339872 MCM9Q9NXL9 1143 aa15.7■□□□□ 0.1
HMGB1-202ENST00000339872 ERICH2A1L162 156 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 CCDC69A6NI79 296 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 H3BQV1 296 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 CPLX1O14810 134 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 RXRAP19793 462 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 LIFRP42702 1097 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 METAP2P50579 478 aaKnown RBP eCLIP15.69■□□□□ 0.1
HMGB1-202ENST00000339872 PPP4CP60510 307 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 SLC4A8Q2Y0W8 1093 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 IFFO2Q5TF58 517 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 SLF2Q8IX21 1173 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 GDPD2Q9HCC8 539 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 PRDM1O75626 825 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 CYP2D6P10635 497 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 FOSBP53539 338 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 WTAPQ15007 396 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 KLHL40Q2TBA0 621 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 UBAC1Q9BSL1 405 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 CNPY2Q9Y2B0 182 aa15.69■□□□□ 0.1
HMGB1-202ENST00000339872 ZBTB43O43298 467 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 USP17L8P0C7I0 530 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 PCP11498 1178 aaKnown RBP15.68■□□□□ 0.1
HMGB1-202ENST00000339872 NCLP19338 710 aaKnown RBP15.68■□□□□ 0.1
HMGB1-202ENST00000339872 SBK1Q52WX2 424 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 CERS3Q8IU89 383 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 SLC16A10Q8TF71 515 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 MYL10Q9BUA6 226 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 DBNDD1Q9H9R9 158 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 SLC12A7Q9Y666 1083 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 GPR75-ASB3A0A0A6YYF3 556 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 RANBP6O60518 1105 aaKnown RBP15.68■□□□□ 0.1
HMGB1-202ENST00000339872 SLC3A2P08195 630 aaKnown RBP15.68■□□□□ 0.1
HMGB1-202ENST00000339872 CCDC144CPQ8IYA2 1237 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 TGFBRAP1Q8WUH2 860 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 MTA3Q9BTC8 594 aa15.68■□□□□ 0.1
HMGB1-202ENST00000339872 MKRN1Q9UHC7 482 aaKnown RBP15.68■□□□□ 0.1
HMGB1-202ENST00000339872 GOLGA8AA7E2F4 631 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 F8W031 263 aaPredicted RBP15.67■□□□□ 0.1
HMGB1-202ENST00000339872 DNM1Q05193 864 aaKnown RBP15.67■□□□□ 0.1
HMGB1-202ENST00000339872 CERS5Q8N5B7 392 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 GAKO14976 1311 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 DDX60LQ5H9U9 1706 aaKnown RBP15.67■□□□□ 0.1
HMGB1-202ENST00000339872 ADAMTSL1Q8N6G6 1762 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 FOCADQ5VW36 1801 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 ECM29Q5VYK3 1845 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 FGRP09769 529 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 SYNE3Q6ZMZ3 975 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 MAPKAPK5Q8IW41 473 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 MXD3Q9BW11 206 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.67■□□□□ 0.1
HMGB1-202ENST00000339872 SUGT1Q9Y2Z0 365 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 TNKSO95271 1327 aa15.67■□□□□ 0.1
HMGB1-202ENST00000339872 FIBPO43427 364 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 FDPSP14324 419 aaKnown RBP15.66■□□□□ 0.1
HMGB1-202ENST00000339872 PLCG2P16885 1265 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 USP48Q86UV5 1035 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 CCDC125Q86Z20 511 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 AMOTL1Q8IY63 956 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 TEX11Q8IYF3 940 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 C7orf43Q8WVR3 580 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 FAM163AQ96GL9 167 aaPredicted RBP15.66■□□□□ 0.1
HMGB1-202ENST00000339872 MYH15Q9Y2K3 1946 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 SCN9AQ15858 1988 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms