RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 POLD1P28340 1107 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 BTDP43251 543 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 PPARAQ07869 468 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 RAB3GAP1Q15042 981 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 ANKRD1Q15327 319 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 FOXD4L5Q5VV16 416 aaPredicted RBP4.9□□□□□ -1.63
MCF2-201ENST00000338585 CTR9Q6PD62 1173 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 FOXD4L4Q8WXT5 416 aaPredicted RBP4.9□□□□□ -1.63
MCF2-201ENST00000338585 TNPO1Q92973 898 aaKnown RBP4.9□□□□□ -1.63
MCF2-201ENST00000338585 CHAMP1Q96JM3 812 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 ZSCAN31Q96LW9 406 aaPredicted RBP4.9□□□□□ -1.63
MCF2-201ENST00000338585 SGIP1Q9BQI5 828 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 ANP32EQ9BTT0 268 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 DCP1AQ9NPI6 582 aaPredicted RBP4.9□□□□□ -1.63
MCF2-201ENST00000338585 KIF13BQ9NQT8 1826 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 MYH2Q9UKX2 1941 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 TIAM2Q8IVF5 1701 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 KDM4AO75164 1064 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 MCM5P33992 734 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 SCNN1DP51172 638 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 RRP12Q5JTH9 1297 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 AKNAD1Q5T1N1 836 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 RAB11FIP4Q86YS3 637 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 IL27Q8NEV9 243 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 TBC1D22AQ8WUA7 517 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 AGXT2Q9BYV1 514 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 CRNKL1Q9BZJ0 848 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 SENP2Q9HC62 589 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 CWC22Q9HCG8 908 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 SH2B1Q9NRF2 756 aaPredicted RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 TOMM22Q9NS69 142 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 BRPF3Q9ULD4 1205 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 NAP1L2Q9ULW6 460 aaPredicted RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 ADAMTSL1Q8N6G6 1762 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 COL4A5P29400 1685 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 GPR75-ASB3A0A0A6YYF3 556 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 YDJCA8MPS7 323 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 PPIP5K2O43314 1243 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 PPFIA3O75145 1194 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 PRDM1O75626 825 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 USP17L8P0C7I0 530 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 PTGER2P43116 358 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 CCT2P78371 535 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 GSTO1P78417 241 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 KIAA2012Q0VF49 1180 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 SCRN1Q12765 414 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 TRDNQ13061 729 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 CCDC93Q567U6 631 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 STAG1Q8WVM7 1258 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 ZKSCAN3Q9BRR0 538 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 NCOA5Q9HCD5 579 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 ZNF277Q9NRM2 450 aaPredicted RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 ZSWIM5Q9P217 1185 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 MKRN1Q9UHC7 482 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 TTF2Q9UNY4 1162 aaKnown RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 DAGLAQ9Y4D2 1042 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 FARP1Q9Y4F1 1045 aaPredicted RBP4.89□□□□□ -1.63
MCF2-201ENST00000338585 PCDHAC2Q9Y5I4 1007 aa4.89□□□□□ -1.63
MCF2-201ENST00000338585 JAK2O60674 1132 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 LDHCP07864 332 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 GJB2P29033 226 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 PDIA3P30101 505 aaKnown RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 USP5P45974 858 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 RHBDL3P58872 404 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 PPP4CP60510 307 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 TGFB2P61812 414 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 DACT2Q5SW24 774 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 CC2D2BQ6DHV5 1058 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 MFSD6Q6ZSS7 791 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 PODNQ7Z5L7 613 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 KIAA0825Q8IV33 1275 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 MAPKAPK5Q8IW41 473 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 TGFBRAP1Q8WUH2 860 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 GTF3C6Q969F1 213 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 MCM9Q9NXL9 1143 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 PIM2Q9P1W9 311 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 SAP30BPQ9UHR5 308 aaKnown RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 ANAPC4Q9UJX5 808 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 SMC3Q9UQE7 1217 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 GAKO14976 1311 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 ZNF646O15015 1829 aaPredicted RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 KLF18A0A0U1RQI7 1052 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 SH2B2O14492 632 aaPredicted RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 CTDNEP1O95476 244 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 BAG3O95817 575 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 RXRAP19793 462 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 GIMAP6Q6P9H5 292 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 TMED8Q6PL24 325 aaPredicted RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 IGDCC4Q8TDY8 1250 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 NOL10Q9BSC4 688 aaKnown RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 ATP8A2Q9NTI2 1148 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 HPS5Q9UPZ3 1129 aa4.88□□□□□ -1.63
MCF2-201ENST00000338585 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.88□□□□□ -1.63
MCF2-201ENST00000338585 USP17L3A6NCW0 530 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 USP17L4A6NCW7 530 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 GOLGA8BA8MQT2 603 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 PFKFB2O60825 505 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 BRD1O95696 1058 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 SYT1P21579 422 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 MCM4P33991 863 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms