RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CPLX1O14810 134 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 CCDC175P0C221 793 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 SLC35F6Q8N357 371 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 MICALL1Q8N3F8 863 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 NKX2-3Q8TAU0 364 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 HNRNPLLQ8WVV9 542 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 ADGRG1Q9Y653 693 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 COBLO75128 1261 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 GRIN1Q05586 938 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 PLEKHO1Q53GL0 409 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 HSP90B2PQ58FF3 399 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 NCAPH2Q6IBW4 605 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 ACRBPQ8NEB7 543 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 HPSEQ9Y251 543 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 DIP2AQ14689 1571 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 NCAPD2Q15021 1401 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 EIF3JO75822 258 aaKnown RBP15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 HOXB7P09629 217 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 USP5P45974 858 aa15.36■□□□□ 0.05
CCDC88C-201ENST00000331194 M0R2C6 588 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 ZMYND10O75800 440 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 RBL2Q08999 1139 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 MSANTD4Q8NCY6 345 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 MYCBPQ99417 103 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 EHD4Q9H223 541 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 SEC31BQ9NQW1 1179 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 NEURL1BA8MQ27 555 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 RNF40O75150 1001 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 PPM1EQ8WY54 764 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 PHKBQ93100 1093 aa15.35■□□□□ 0.05
CCDC88C-201ENST00000331194 RPS6KA5O75582 802 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 SLC39A6Q13433 755 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 NCAPGQ9BPX3 1015 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 MAN1B1Q9UKM7 699 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 KCNH3Q9ULD8 1083 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 MAST3O60307 1309 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 ATP5J2-PTCD1G3V325 749 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 PRC1O43663 620 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 KIF5CO60282 957 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 PTCD1O75127 700 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 ERLIN1O75477 346 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 RFX5P48382 616 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 LIG3P49916 1009 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 STX17P56962 302 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 GCKRQ14397 625 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 UBE3BQ7Z3V4 1068 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 BRAPQ7Z569 592 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 VPS37DQ86XT2 251 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 PAG1Q9NWQ8 432 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 RAI14Q9P0K7 980 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 SYF2O95926 243 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 PTPAQ15257 358 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 CT47A1Q5JQC4 288 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 SLC9C2Q5TAH2 1124 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 CCDC102BQ68D86 513 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 CEP112Q8N8E3 955 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 BANK1Q8NDB2 785 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 KAT2BQ92831 832 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 DEF6Q9H4E7 631 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 UTYO14607 1347 aa15.34■□□□□ 0.05
CCDC88C-201ENST00000331194 PDIA6Q15084 440 aa15.33■□□□□ 0.05
CCDC88C-201ENST00000331194 KLHL10Q6JEL2 608 aa15.33■□□□□ 0.05
CCDC88C-201ENST00000331194 PATL2C9JE40 543 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 AKR1B15C9JRZ8 316 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 ZNF18P17022 549 aa15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 AKAP17AQ02040 695 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 GSPT2Q8IYD1 628 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 FAM71BQ8TC56 605 aa15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 DSCC1Q9BVC3 393 aa15.33■□□□□ 0.04
CCDC88C-201ENST00000331194 XAGE3Q8WTP9 111 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 OSBP2Q969R2 916 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 MKRN1Q9UHC7 482 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 CASP1P29466 404 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 NR1I3Q14994 352 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 RESP18Q5W5W9 173 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 COPS6Q7L5N1 327 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 COPRSQ9NQ92 184 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 TFR2Q9UP52 801 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 SH3TC1Q8TE82 1336 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 CTAGE9A4FU28 777 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 CDC25AP30304 524 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 ANTXR2P58335 489 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 ZMYM1Q5SVZ6 1142 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 FBXW10Q5XX13 1052 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 ALG1Q9BT22 464 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 SENP2Q9HC62 589 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 BRMS1Q9HCU9 246 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 TRIM10Q9UDY6 481 aa15.32■□□□□ 0.04
CCDC88C-201ENST00000331194 CTAGE15A4D2H0 777 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 ENC1O14682 589 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 CTAGE8P0CG41 777 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 MDM2Q00987 491 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 CHRNA2Q15822 529 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 KRT40Q6A162 431 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 TTC19Q6DKK2 380 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 TADA2BQ86TJ2 420 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 CTAGE6Q86UF2 777 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 CTAGE4Q8IX94 777 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 IGSF22Q8N9C0 903 aa15.31■□□□□ 0.04
CCDC88C-201ENST00000331194 MAP3K14Q99558 947 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms