RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 GOLGA8FQ08AF8 430 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 GOLGA8DPQ0D2H9 430 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 MCM10Q7L590 875 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 LEO1Q8WVC0 666 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-201ENST00000328923 RUFY2Q8WXA3 655 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 STK31Q9BXU1 1019 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 CYP46A1Q9Y6A2 500 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 CPA1P15085 419 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 ST3GAL1Q11201 340 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 USP4Q13107 963 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 MSANTD4Q8NCY6 345 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 EYA1Q99502 592 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 NAT10Q9H0A0 1025 aaKnown RBP13.47□□□□□ -0.25
SHMT2-201ENST00000328923 KIF1AQ12756 1690 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 LTN1O94822 1766 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 GIGYF1O75420 1035 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-201ENST00000328923 KIAA0754O94854 1291 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 EZRP15311 586 aaKnown RBP13.47□□□□□ -0.25
SHMT2-201ENST00000328923 RCSD1Q6JBY9 416 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 SRGAP1Q7Z6B7 1085 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 FAM228AQ86W67 206 aa13.47□□□□□ -0.25
SHMT2-201ENST00000328923 MST1RQ04912 1400 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 RASSF9O75901 435 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 HMGB1P09429 215 aaKnown RBP13.46□□□□□ -0.25
SHMT2-201ENST00000328923 LARP1BQ659C4 914 aaKnown RBP13.46□□□□□ -0.25
SHMT2-201ENST00000328923 OR8K1Q8NGG5 319 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 ATP6V0A4Q9HBG4 840 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 TPCN1Q9ULQ1 816 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 PPP2R2CQ9Y2T4 447 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 C1orf167Q5SNV9 1468 aa13.46□□□□□ -0.25
SHMT2-201ENST00000328923 CUTAO60888 179 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 ZNF202O95125 648 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 SMTNP53814 917 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 SLC8A3P57103 927 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 FLIIQ13045 1269 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 POLA2Q14181 598 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 CCDC40Q4G0X9 1142 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 HHATQ5VTY9 493 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 ANAPC4Q9UJX5 808 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 PCDHGA4Q9Y5G9 962 aa13.46□□□□□ -0.26
SHMT2-201ENST00000328923 POTEB2H3BUK9 544 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 TTLL7Q6ZT98 887 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 NCAPG2Q86XI2 1143 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 CCDC97Q96F63 343 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 SCLT1Q96NL6 688 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 GOPCQ9HD26 462 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 SLC40A1Q9NP59 571 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 GRIN2DO15399 1336 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 MEFVO15553 781 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 ZSCAN12O43309 604 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 SSBP05455 408 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 MAGEA8P43361 318 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 AARSP49588 968 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 SNCBQ16143 134 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 ME3Q16798 604 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 CCDC181Q5TID7 509 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 MAB21L3Q8N8X9 362 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 CCDC12Q8WUD4 166 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 JAKMIP1Q96N16 626 aaKnown RBP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 ORAI2Q96SN7 254 aa13.45□□□□□ -0.26
SHMT2-201ENST00000328923 ALDH8A1Q9H2A2 487 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-201ENST00000328923 NFAT5O94916 1531 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 EIF3HO15372 352 aaKnown RBP eCLIP13.44□□□□□ -0.26
SHMT2-201ENST00000328923 MTHFSDQ2M296 383 aaKnown RBP13.44□□□□□ -0.26
SHMT2-201ENST00000328923 KIAA1328Q86T90 577 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 RHPN1Q8TCX5 695 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 EZH1Q92800 747 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-201ENST00000328923 SLC39A2Q9NP94 309 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 TSPYL4Q9UJ04 414 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 ZEB2O60315 1214 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 RTN3O95197 1032 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-201ENST00000328923 TFRCP02786 760 aaKnown RBP13.44□□□□□ -0.26
SHMT2-201ENST00000328923 RANBP1P43487 201 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 GNGT1P63211 74 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 ANKRD1Q15327 319 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 CEP57L1Q8IYX8 460 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 FAM76AQ8TAV0 307 aa13.44□□□□□ -0.26
SHMT2-201ENST00000328923 ATXN2Q99700 1313 aaKnown RBP13.44□□□□□ -0.26
SHMT2-201ENST00000328923 PHLPP1O60346 1717 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 UBTFL1P0CB47 393 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-201ENST00000328923 NEFHP12036 1026 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 LAMB3Q13751 1172 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 TBC1D5Q92609 795 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 FAM163AQ96GL9 167 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-201ENST00000328923 VCPKMTQ9H867 229 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 IL1RAPL2Q9NP60 686 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 ANO10Q9NW15 660 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 RGS17Q9UGC6 210 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-201ENST00000328923 BLOC1S6Q9UL45 172 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 FOXO3O43524 673 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 GLRX3O76003 335 aaKnown RBP13.43□□□□□ -0.26
SHMT2-201ENST00000328923 ZKSCAN1P17029 563 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-201ENST00000328923 HSP90AB4PQ58FF6 505 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 CCDC13Q8IYE1 715 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 NECAB1Q8N987 351 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 CAPS2Q9BXY5 557 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 YIPF3Q9GZM5 350 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 MYO6Q9UM54 1294 aa13.43□□□□□ -0.26
SHMT2-201ENST00000328923 PSMA5P28066 241 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms