RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DDIT3P35638 169 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 PRELPP51888 382 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 GIMAP6Q6P9H5 292 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 DHX37Q8IY37 1157 aaKnown RBP11.87□□□□□ -0.51
HMGB3-201ENST00000325307 SNX21Q969T3 373 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 IL17RAQ96F46 866 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 SAP30BPQ9UHR5 308 aaKnown RBP11.87□□□□□ -0.51
HMGB3-201ENST00000325307 PPARAQ07869 468 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 RRP12Q5JTH9 1297 aaKnown RBP11.87□□□□□ -0.51
HMGB3-201ENST00000325307 TBC1D10CQ8IV04 446 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 SPRYD3Q8NCJ5 442 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 SERPINA10Q9UK55 444 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 PCDHAC2Q9Y5I4 1007 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 ARFGEF1Q9Y6D6 1849 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 USP17L8P0C7I0 530 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 HDLBPQ00341 1268 aaKnown RBP11.87□□□□□ -0.51
HMGB3-201ENST00000325307 CFAP100Q494V2 611 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 ZDHHC15Q96MV8 337 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 POLR3DP05423 398 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-201ENST00000325307 HMGB1P09429 215 aaKnown RBP11.86□□□□□ -0.51
HMGB3-201ENST00000325307 RPS6KB1P23443 525 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 RHBDL3P58872 404 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 APOBEC3HQ6NTF7 200 aaKnown RBP11.86□□□□□ -0.51
HMGB3-201ENST00000325307 CTR9Q6PD62 1173 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 MFSD6Q6ZSS7 791 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 AGBL3Q8NEM8 1001 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 NCOA7Q8NI08 942 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 CDC42EP5Q6NZY7 148 aa11.86□□□□□ -0.51
HMGB3-201ENST00000325307 SAMD1Q6SPF0 538 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-201ENST00000325307 LARP6Q9BRS8 491 aaKnown RBP11.86□□□□□ -0.51
HMGB3-201ENST00000325307 ARPP21Q9UBL0 812 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-201ENST00000325307 K7ELQ4 463 aaPredicted RBP11.85□□□□□ -0.51
HMGB3-201ENST00000325307 DLGAP5Q15398 846 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 CHST3Q7LGC8 479 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 MRIQ9BWK5 157 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 NBPF3Q9H094 633 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 INCENPQ9NQS7 918 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 RNF181Q9P0P0 153 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 SLC3A2P08195 630 aaKnown RBP11.85□□□□□ -0.51
HMGB3-201ENST00000325307 CYP2D6P10635 497 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 COL9A3Q14050 684 aaPredicted RBP11.85□□□□□ -0.51
HMGB3-201ENST00000325307 AKNAD1Q5T1N1 836 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 LRRC2Q9BYS8 371 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 RNF41Q9H4P4 317 aaPredicted RBP11.85□□□□□ -0.51
HMGB3-201ENST00000325307 FZD9O00144 591 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 MCM2P49736 904 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 CACNB3P54284 484 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 AK2P54819 239 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 DHX32Q7L7V1 743 aaKnown RBP11.85□□□□□ -0.51
HMGB3-201ENST00000325307 GMLQ99445 158 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 FLT1P17948 1338 aa11.85□□□□□ -0.51
HMGB3-201ENST00000325307 TDRD3Q9H7E2 651 aaKnown RBP11.84□□□□□ -0.51
HMGB3-201ENST00000325307 B4E1Z4 1266 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 SMIM22K7EJ46 135 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 GMPSP49915 693 aaPredicted RBP11.84□□□□□ -0.51
HMGB3-201ENST00000325307 RBM26Q5T8P6 1007 aaKnown RBP11.84□□□□□ -0.51
HMGB3-201ENST00000325307 CNNM2Q9H8M5 875 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 TMOD2Q9NZR1 351 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 NEDD4P46934 1319 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 ZNF541Q9H0D2 1346 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 MCM5P33992 734 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 TCP10Q12799 353 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 GSE1Q14687 1217 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 PAXIP1Q6ZW49 1069 aaPredicted RBP11.84□□□□□ -0.51
HMGB3-201ENST00000325307 PRMT6Q96LA8 375 aaPredicted RBP11.84□□□□□ -0.51
HMGB3-201ENST00000325307 TTC14Q96N46 770 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 FOXD4L1Q9NU39 408 aa11.84□□□□□ -0.51
HMGB3-201ENST00000325307 WDHD1O75717 1129 aaPredicted RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 Q6ZUG5 572 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 KRT23Q9C075 422 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 NAP1L2Q9ULW6 460 aaPredicted RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 UTRNP46939 3433 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 PRC1O43663 620 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 KDM4AO75164 1064 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 PRDM1O75626 825 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 RPS12P25398 132 aaKnown RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 EVX2Q03828 476 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 FAM43AQ8N2R8 423 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 STAG1Q8WVM7 1258 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 MKRN1Q9UHC7 482 aaKnown RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 BAZ2AQ9UIF9 1905 aaKnown RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 CLRN2A0PK11 232 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 PDE4BQ07343 736 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 ANKRD1Q15327 319 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 SBK1Q52WX2 424 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 C9orf131Q5VYM1 1079 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 ZSCAN29Q8IWY8 852 aaPredicted RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 DDX4Q9NQI0 724 aaKnown RBP11.83□□□□□ -0.52
HMGB3-201ENST00000325307 ANAPC4Q9UJX5 808 aa11.83□□□□□ -0.52
HMGB3-201ENST00000325307 SHTN1A0MZ66 631 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 SPDYE2BA6NHP3 402 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 RANBP6O60518 1105 aaKnown RBP11.82□□□□□ -0.52
HMGB3-201ENST00000325307 SPDYE6P0CI01 402 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 NFIAQ12857 509 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 C12orf60Q5U649 245 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 MICALL2Q8IY33 904 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 ADAMTSL1Q8N6G6 1762 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 BRPF3Q9ULD4 1205 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 LIMCH1Q9UPQ0 1083 aa11.82□□□□□ -0.52
HMGB3-201ENST00000325307 MYO1BO43795 1136 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms