RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SH3BP5LQ7L8J4 393 aa19.97■□□□□ 0.79
LSM1-201ENST00000311351 IFNL1Q8IU54 200 aa19.97■□□□□ 0.79
LSM1-201ENST00000311351 MCOLN1Q9GZU1 580 aa19.97■□□□□ 0.79
LSM1-201ENST00000311351 BCL11AQ9H165 835 aa19.97■□□□□ 0.79
LSM1-201ENST00000311351 CHMP4BQ9H444 224 aaKnown RBP19.97■□□□□ 0.79
LSM1-201ENST00000311351 PIH1D3Q9NQM4 214 aaKnown RBP19.97■□□□□ 0.79
LSM1-201ENST00000311351 NDUFB9Q9Y6M9 179 aa19.97■□□□□ 0.79
LSM1-201ENST00000311351 SPDYE5A6NIY4 337 aa19.96■□□□□ 0.79
LSM1-201ENST00000311351 DGKZQ13574 1117 aa19.96■□□□□ 0.79
LSM1-201ENST00000311351 ABHD8Q96I13 439 aa19.96■□□□□ 0.79
LSM1-201ENST00000311351 FOCADQ5VW36 1801 aa19.96■□□□□ 0.79
LSM1-201ENST00000311351 DDTLA6NHG4 134 aaPredicted RBP19.95■□□□□ 0.78
LSM1-201ENST00000311351 LDHCP07864 332 aa19.95■□□□□ 0.78
LSM1-201ENST00000311351 SLURP2P0DP57 97 aa19.95■□□□□ 0.78
LSM1-201ENST00000311351 ADGRA1Q86SQ6 560 aa19.95■□□□□ 0.78
LSM1-201ENST00000311351 ZSCAN29Q8IWY8 852 aaPredicted RBP19.95■□□□□ 0.78
LSM1-201ENST00000311351 ZNF296Q8WUU4 475 aaPredicted RBP19.95■□□□□ 0.78
LSM1-201ENST00000311351 KIF1BPQ96EK5 621 aa19.95■□□□□ 0.78
LSM1-201ENST00000311351 DOCK1Q14185 1865 aa19.94■□□□□ 0.78
LSM1-201ENST00000311351 INHBEP58166 350 aa19.94■□□□□ 0.78
LSM1-201ENST00000311351 NAA16Q6N069 864 aaPredicted RBP19.94■□□□□ 0.78
LSM1-201ENST00000311351 BRI3BPQ8WY22 251 aa19.94■□□□□ 0.78
LSM1-201ENST00000311351 MS4A4AQ96JQ5 239 aa19.94■□□□□ 0.78
LSM1-201ENST00000311351 PTPN18Q99952 460 aa19.94■□□□□ 0.78
LSM1-201ENST00000311351 SIPA1L1O43166 1804 aa19.94■□□□□ 0.78
LSM1-201ENST00000311351 TESPA1A2RU30 521 aaPredicted RBP19.93■□□□□ 0.78
LSM1-201ENST00000311351 ALDH1A1P00352 501 aa19.93■□□□□ 0.78
LSM1-201ENST00000311351 ERO1BQ86YB8 467 aa19.93■□□□□ 0.78
LSM1-201ENST00000311351 TEX11Q8IYF3 940 aa19.93■□□□□ 0.78
LSM1-201ENST00000311351 SH3RF3Q8TEJ3 882 aaPredicted RBP19.93■□□□□ 0.78
LSM1-201ENST00000311351 CFHR5Q9BXR6 569 aa19.93■□□□□ 0.78
LSM1-201ENST00000311351 ANTXR1Q9H6X2 564 aa19.93■□□□□ 0.78
LSM1-201ENST00000311351 AATFQ9NY61 560 aaKnown RBP eCLIP19.93■□□□□ 0.78
LSM1-201ENST00000311351 ZNF112Q9UJU3 913 aa19.93■□□□□ 0.78
LSM1-201ENST00000311351 CCL15-CCL14A0A0B4J2E2 113 aa19.92■□□□□ 0.78
LSM1-201ENST00000311351 GPR25O00155 361 aa19.92■□□□□ 0.78
LSM1-201ENST00000311351 CCL15Q16663 113 aa19.92■□□□□ 0.78
LSM1-201ENST00000311351 CLASRPQ8N2M8 674 aaKnown RBP19.92■□□□□ 0.78
LSM1-201ENST00000311351 IRF6O14896 467 aa19.91■□□□□ 0.78
LSM1-201ENST00000311351 RAB11FIP3O75154 756 aa19.91■□□□□ 0.78
LSM1-201ENST00000311351 IDH1O75874 414 aaKnown RBP19.91■□□□□ 0.78
LSM1-201ENST00000311351 GTF2A2P52657 109 aa19.91■□□□□ 0.78
LSM1-201ENST00000311351 RRP1P56182 461 aaKnown RBP19.91■□□□□ 0.78
LSM1-201ENST00000311351 PPIL2Q13356 520 aa19.91■□□□□ 0.78
LSM1-201ENST00000311351 NOL10Q9BSC4 688 aaKnown RBP19.91■□□□□ 0.78
LSM1-201ENST00000311351 COL2A1P02458 1487 aaPredicted RBP19.91■□□□□ 0.78
LSM1-201ENST00000311351 ATAD5Q96QE3 1844 aa19.9■□□□□ 0.78
LSM1-201ENST00000311351 FAM196BA6NMK8 535 aa19.9■□□□□ 0.78
LSM1-201ENST00000311351 CRHR2Q13324 411 aa19.9■□□□□ 0.78
LSM1-201ENST00000311351 NOL9Q5SY16 702 aaKnown RBP19.9■□□□□ 0.78
LSM1-201ENST00000311351 OSBPL5Q9H0X9 879 aaPredicted RBP19.9■□□□□ 0.78
LSM1-201ENST00000311351 PHIPQ8WWQ0 1821 aa19.9■□□□□ 0.78
LSM1-201ENST00000311351 PHF20L1A8MW92 1017 aa19.89■□□□□ 0.77
LSM1-201ENST00000311351 NPM3O75607 178 aaKnown RBP19.89■□□□□ 0.77
LSM1-201ENST00000311351 MAP4K4O95819 1239 aaPredicted RBP19.89■□□□□ 0.77
LSM1-201ENST00000311351 IFIT2P09913 472 aaKnown RBP19.89■□□□□ 0.77
LSM1-201ENST00000311351 PTPRFP10586 1907 aa19.89■□□□□ 0.77
LSM1-201ENST00000311351 CYP7A1P22680 504 aa19.89■□□□□ 0.77
LSM1-201ENST00000311351 NOM1Q5C9Z4 860 aaKnown RBP19.89■□□□□ 0.77
LSM1-201ENST00000311351 OTUD7BQ6GQQ9 843 aa19.89■□□□□ 0.77
LSM1-201ENST00000311351 CTU1Q7Z7A3 348 aaKnown RBP19.89■□□□□ 0.77
LSM1-201ENST00000311351 FAM43AQ8N2R8 423 aa19.89■□□□□ 0.77
LSM1-201ENST00000311351 FKTNO75072 461 aa19.88■□□□□ 0.77
LSM1-201ENST00000311351 BAG3O95817 575 aa19.88■□□□□ 0.77
LSM1-201ENST00000311351 DYNLL1P63167 89 aaKnown RBP19.88■□□□□ 0.77
LSM1-201ENST00000311351 PPATQ06203 517 aa19.88■□□□□ 0.77
LSM1-201ENST00000311351 SNAPC2Q13487 334 aa19.88■□□□□ 0.77
LSM1-201ENST00000311351 MAPKAPK5Q8IW41 473 aa19.88■□□□□ 0.77
LSM1-201ENST00000311351 MAGEB6Q8N7X4 407 aa19.88■□□□□ 0.77
LSM1-201ENST00000311351 MYH1P12882 1939 aa19.87■□□□□ 0.77
LSM1-201ENST00000311351 SMARCA5O60264 1052 aaPredicted RBP19.87■□□□□ 0.77
LSM1-201ENST00000311351 PPP4CP60510 307 aa19.87■□□□□ 0.77
LSM1-201ENST00000311351 MIGA1Q8NAN2 632 aa19.87■□□□□ 0.77
LSM1-201ENST00000311351 TGFBRAP1Q8WUH2 860 aa19.87■□□□□ 0.77
LSM1-201ENST00000311351 DNAJC2Q99543 621 aaKnown RBP19.87■□□□□ 0.77
LSM1-201ENST00000311351 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.87■□□□□ 0.77
LSM1-201ENST00000311351 FLT1P17948 1338 aa19.86■□□□□ 0.77
LSM1-201ENST00000311351 CCDC85CA6NKD9 419 aa19.86■□□□□ 0.77
LSM1-201ENST00000311351 CETPP11597 493 aa19.86■□□□□ 0.77
LSM1-201ENST00000311351 PLCG2P16885 1265 aa19.86■□□□□ 0.77
LSM1-201ENST00000311351 MAP3K10Q02779 954 aa19.86■□□□□ 0.77
LSM1-201ENST00000311351 TAF1CQ15572 869 aaPredicted RBP19.86■□□□□ 0.77
LSM1-201ENST00000311351 SCYL3Q8IZE3 742 aa19.86■□□□□ 0.77
LSM1-201ENST00000311351 EDC3Q96F86 508 aaKnown RBP19.86■□□□□ 0.77
LSM1-201ENST00000311351 DDX60LQ5H9U9 1706 aaKnown RBP19.85■□□□□ 0.77
LSM1-201ENST00000311351 MYH7P12883 1935 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 BTBD19C9JJ37 291 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 GOLIM4O00461 696 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 MAP3K12Q12852 859 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 LRRCC1Q9C099 1032 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.85■□□□□ 0.77
LSM1-201ENST00000311351 KCNH4Q9UQ05 1017 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 NAV1Q8NEY1 1877 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 ZSWIM8A7E2V4 1837 aa19.85■□□□□ 0.77
LSM1-201ENST00000311351 IGSF3O75054 1194 aa19.84■□□□□ 0.77
LSM1-201ENST00000311351 CCDC84Q86UT8 332 aaPredicted RBP19.84■□□□□ 0.77
LSM1-201ENST00000311351 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.84■□□□□ 0.77
LSM1-201ENST00000311351 PICK1Q9NRD5 415 aa19.84■□□□□ 0.77
LSM1-201ENST00000311351 PCDHB15Q9Y5E8 787 aa19.84■□□□□ 0.77
LSM1-201ENST00000311351 TBC1D12O60347 775 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms