RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 ZNF804BA4D1E1 1349 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 GYS2P54840 703 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 R3HDM1Q15032 1099 aaKnown RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 SLC10A5Q5PT55 438 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 TMC6Q7Z403 805 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 NECAB1Q8N987 351 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 BRIP1Q9BX63 1249 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 JRKLQ9Y4A0 524 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 PSDA5PKW4 1024 aaPredicted RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 USP27XA6NNY8 438 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 RNF113AO15541 343 aaKnown RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 STK3Q13188 491 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 SMC1AQ14683 1233 aaKnown RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 ARID5BQ14865 1188 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 MCMDC2Q4G0Z9 681 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 STK11IPQ8N1F8 1099 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 SPATA5Q8NB90 893 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 RGL2O15211 777 aa12.52□□□□□ -0.4
LSM3-201ENST00000306024 MCM6Q14566 821 aa12.52□□□□□ -0.4
LSM3-201ENST00000306024 ZSCAN31Q96LW9 406 aaPredicted RBP12.52□□□□□ -0.4
LSM3-201ENST00000306024 EIF3JO75822 258 aaKnown RBP12.52□□□□□ -0.41
LSM3-201ENST00000306024 SEC31AO94979 1220 aaKnown RBP12.52□□□□□ -0.41
LSM3-201ENST00000306024 CPA1P15085 419 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 MNAT1P51948 309 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 DDR1Q08345 913 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 RALYLQ86SE5 291 aaKnown RBP12.52□□□□□ -0.41
LSM3-201ENST00000306024 CCDC125Q86Z20 511 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 NACAP1Q9BZK3 213 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 ZCCHC17Q9NP64 241 aaKnown RBP12.52□□□□□ -0.41
LSM3-201ENST00000306024 VPS18Q9P253 973 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 TULP2O00295 520 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 PPEF1O14829 653 aaPredicted RBP12.52□□□□□ -0.41
LSM3-201ENST00000306024 NPR1P16066 1061 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 CYP7A1P22680 504 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 SLFNL1Q499Z3 407 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 DENND2AQ9ULE3 1009 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.52□□□□□ -0.411e-23■□□□□ 8.2
LSM3-201ENST00000306024 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.52□□□□□ -0.41
LSM3-201ENST00000306024 XDHP47989 1333 aa12.52□□□□□ -0.41
LSM3-201ENST00000306024 TDO2P48775 406 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 EVCP57679 992 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 CCDC129Q6ZRS4 1044 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 MAGEB6Q8N7X4 407 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 TMEM87AQ8NBN3 555 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 CNKSR1Q969H4 720 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 ZSWIM4Q9H7M6 989 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 E2F4Q16254 413 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 AMOTL1Q8IY63 956 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 SMARCE1Q969G3 411 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 CARD6Q9BX69 1037 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 H0YHG0 523 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 SGSM2O43147 1006 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 CAVIN2O95810 425 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 BRD2P25440 801 aaKnown RBP12.51□□□□□ -0.41
LSM3-201ENST00000306024 PSMA5P28066 241 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 CCDC91Q7Z6B0 441 aa12.51□□□□□ -0.41
LSM3-201ENST00000306024 RBM5P52756 815 aaKnown RBP eCLIP12.5□□□□□ -0.41
LSM3-201ENST00000306024 STX1AQ16623 288 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 NAA16Q6N069 864 aaPredicted RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 MASTLQ96GX5 879 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 GPR101Q96P66 508 aaPredicted RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 CAMKK2Q96RR4 588 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 EYA3Q99504 573 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 ACBD3Q9H3P7 528 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 ANO10Q9NW15 660 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 POLRMTO00411 1230 aaKnown RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 ATP2B4P23634 1241 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 CCDC144BQ3MJ40 725 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 CCDC144CPQ8IYA2 1237 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 PDILTQ8N807 584 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 GOLGA5Q8TBA6 731 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 F8W031 263 aaPredicted RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 SART3Q15020 963 aaKnown RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 RRP12Q5JTH9 1297 aaKnown RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 AXDND1Q5T1B0 1012 aaPredicted RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 SPTY2D1Q68D10 685 aaPredicted RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 MICALL1Q8N3F8 863 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 MIGA1Q8NAN2 632 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 SH2B1Q9NRF2 756 aaPredicted RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 LEMD3Q9Y2U8 911 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 RBM8AQ9Y5S9 174 aaKnown RBP12.5□□□□□ -0.41
LSM3-201ENST00000306024 SHANK3Q9BYB0 1731 aa12.5□□□□□ -0.41
LSM3-201ENST00000306024 PNPLA7Q6ZV29 1317 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 A0A0D9SFI3 127 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 CHRNA5P30532 468 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 AKT1S1Q96B36 256 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 NAPBQ9H115 298 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 LAMB4A4D0S4 1761 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 TTC6Q86TZ1 520 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 SEC62Q99442 399 aaKnown RBP12.49□□□□□ -0.41
LSM3-201ENST00000306024 U3KPZ7 1027 aaPredicted RBP12.49□□□□□ -0.41
LSM3-201ENST00000306024 BTAF1O14981 1849 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 AFDNP55196 1824 aaKnown RBP12.49□□□□□ -0.41
LSM3-201ENST00000306024 USP8P40818 1118 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 HAND2P61296 217 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 BLOC1S2Q6QNY1 142 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 AOPEPQ8N6M6 819 aa12.49□□□□□ -0.41
LSM3-201ENST00000306024 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.48□□□□□ -0.41
LSM3-201ENST00000306024 ERLIN1O75477 346 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms