RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TRIM7Q9C029 511 aa14.41□□□□□ -0.1
COL3A1-201ENST00000304636 ZNF521Q96K83 1311 aa14.41□□□□□ -0.1
COL3A1-201ENST00000304636 PLCD3Q8N3E9 789 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 CSGALNACT2Q8N6G5 542 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 METTL22Q9BUU2 404 aaPredicted RBP14.4□□□□□ -0.1
COL3A1-201ENST00000304636 IQSEC3Q9UPP2 1182 aaPredicted RBP14.4□□□□□ -0.1
COL3A1-201ENST00000304636 MRVI1Q9Y6F6 885 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 KRT40Q6A162 431 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 SREK1Q8WXA9 508 aaKnown RBP14.4□□□□□ -0.1
COL3A1-201ENST00000304636 PLIN2Q99541 437 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 PDE4DQ08499 809 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 TSKSQ9UJT2 592 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 TMEM110-MUSTN1A8MSY1 372 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 PAK2Q13177 524 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 PPP1R7Q15435 360 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 MIGA1Q8NAN2 632 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 DSCC1Q9BVC3 393 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 VIMP08670 466 aaKnown RBP14.4□□□□□ -0.1
COL3A1-201ENST00000304636 TSNARE1Q96NA8 513 aa14.4□□□□□ -0.1
COL3A1-201ENST00000304636 GIGYF1O75420 1035 aaPredicted RBP14.39□□□□□ -0.11
COL3A1-201ENST00000304636 MBD4O95243 580 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 RPL13P26373 211 aaKnown RBP14.39□□□□□ -0.11
COL3A1-201ENST00000304636 TIMM10P62072 90 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 CROCCP2Q86T23 111 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 TDRD7Q8NHU6 1098 aaKnown RBP14.39□□□□□ -0.11
COL3A1-201ENST00000304636 STIM2Q9P246 746 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 CEP83Q9Y592 693 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 ATP11AP98196 1134 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 HS2ST1Q7LGA3 356 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 LRRC59Q96AG4 307 aaKnown RBP14.39□□□□□ -0.11
COL3A1-201ENST00000304636 ZKSCAN3Q9BRR0 538 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 NKIRAS1Q9NYS0 192 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 PPP2R2CQ9Y2T4 447 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 KDM5AP29375 1690 aaKnown RBP14.39□□□□□ -0.11
COL3A1-201ENST00000304636 ATP8B1O43520 1251 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 MYSM1Q5VVJ2 828 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 SSH3Q8TE77 659 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 PLXNC1O60486 1568 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 SBNO1A3KN83 1393 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 ACTN4O43707 911 aaKnown RBP14.39□□□□□ -0.11
COL3A1-201ENST00000304636 SEL1L2Q5TEA6 688 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 CCDC25Q86WR0 208 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 SLF1Q9BQI6 1058 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 TRPM2O94759 1503 aa14.39□□□□□ -0.11
COL3A1-201ENST00000304636 TRAF5O00463 557 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 PPP2R5BQ15173 497 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 INTS8Q75QN2 995 aaKnown RBP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 TTC6Q86TZ1 520 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 CCDC65Q8IXS2 484 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 ZNF274Q96GC6 653 aaPredicted RBP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 TPCN1Q9ULQ1 816 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 UTP11Q9Y3A2 253 aaKnown RBP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 C6orf229H3BNL8 230 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 RBM6P78332 1123 aaKnown RBP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 RAPGEF1Q13905 1077 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 SND1Q7KZF4 910 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 GOLGA5Q8TBA6 731 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 BICD1Q96G01 975 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 TAB2Q9NYJ8 693 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 PFKFB1P16118 471 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 ALDH3A1P30838 453 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 ADKP55263 362 aaKnown RBP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 PNOCQ13519 176 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 PPFIBP2Q8ND30 876 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 IQCDQ96DY2 449 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 CABS1Q96KC9 395 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 ATP6V0A2Q9Y487 856 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 SAR1BQ9Y6B6 198 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 TTC38Q5R3I4 469 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 DCAF5Q96JK2 942 aa14.38□□□□□ -0.11
COL3A1-201ENST00000304636 NAP1L4Q99733 375 aaKnown RBP14.38□□□□□ -0.11
COL3A1-201ENST00000304636 GPAA1O43292 621 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 CFAP221Q4G0U5 840 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 E7EWF7 191 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 FAM13AO94988 1023 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 FERP16591 822 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 ATP5JP18859 108 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 TNNI2P48788 182 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 RGS22Q8NE09 1264 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 PLBD2Q8NHP8 589 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 SUCLG2Q96I99 432 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 SEC62Q99442 399 aaKnown RBP14.37□□□□□ -0.11
COL3A1-201ENST00000304636 IRS4O14654 1257 aaPredicted RBP14.37□□□□□ -0.11
COL3A1-201ENST00000304636 DTNBO60941 627 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 CD2BP2O95400 341 aaKnown RBP14.37□□□□□ -0.11
COL3A1-201ENST00000304636 PTH1RQ03431 593 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 SLC9C1Q4G0N8 1177 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 USP28Q96RU2 1077 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 KDM5CP41229 1560 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 FCHSD1Q86WN1 690 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 KLHDC4Q8TBB5 520 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 IP6K1Q92551 441 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 MCM9Q9NXL9 1143 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 PFKFB2O60825 505 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 CHRNA2Q15822 529 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 PIK3AP1Q6ZUJ8 805 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 OSBPL3Q9H4L5 887 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 MED4Q9NPJ6 270 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 MAPK8IP1Q9UQF2 711 aa14.37□□□□□ -0.11
COL3A1-201ENST00000304636 MAGEA1P43355 309 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 254.2 ms