RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 LRRC27Q9C0I9 530 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 THOC2Q8NI27 1593 aaKnown RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 TAOK3Q9H2K8 898 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 ARHGEF35A5YM69 484 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 GCNT3O95395 438 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 SPATA5Q8NB90 893 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 FAM193BQ96PV7 902 aaPredicted RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 SNW1Q13573 536 aaKnown RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 BEND3Q5T5X7 828 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 GIGYF2Q6Y7W6 1299 aaKnown RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 LINS1Q8NG48 757 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 SEC62Q99442 399 aaKnown RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 ODF2LQ9ULJ1 636 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 GPAA1O43292 621 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 C21orf2O43822 256 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 HS2ST1Q7LGA3 356 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 RMND1Q9NWS8 449 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 SCAF8Q9UPN6 1271 aaKnown RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 YTHDC2Q9H6S0 1430 aaKnown RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 ITKQ08881 620 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 WDR44Q5JSH3 913 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 SCYL2Q6P3W7 929 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 SV2BQ7L1I2 683 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 LEO1Q8WVC0 666 aaPredicted RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 IFT74Q96LB3 600 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 A2MP01023 1474 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 PSMB7Q99436 277 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 NBPF3Q9H094 633 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 VPS54Q9P1Q0 977 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 VAMP4O75379 141 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 FOXD4Q12950 439 aaPredicted RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 NEK11Q8NG66 645 aa8.78□□□□□ -1
SCN9A-201ENST00000303354 ZNF496Q96IT1 587 aaPredicted RBP8.78□□□□□ -1
SCN9A-201ENST00000303354 METTL22Q9BUU2 404 aaPredicted RBP8.77□□□□□ -1
SCN9A-201ENST00000303354 KCNK9Q9NPC2 374 aa8.77□□□□□ -1
SCN9A-201ENST00000303354 RTL9Q8NET4 1388 aa8.77□□□□□ -1
SCN9A-201ENST00000303354 USP19O94966 1318 aa8.77□□□□□ -1
SCN9A-201ENST00000303354 CCDC171Q6TFL3 1326 aa8.77□□□□□ -1
SCN9A-201ENST00000303354 EFCAB5A4FU69 1503 aa8.77□□□□□ -1
SCN9A-201ENST00000303354 PPP1R12AO14974 1030 aaPredicted RBP8.77□□□□□ -1.01
SCN9A-201ENST00000303354 PDCL2Q8N4E4 241 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.77□□□□□ -1.01
SCN9A-201ENST00000303354 FRMD4BQ9Y2L6 1034 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 CD19P15391 556 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 FAM160A1Q05DH4 1040 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 KRT27Q7Z3Y8 459 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 RTL1A6NKG5 1358 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 E7EVH7 732 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 PSMA7O14818 248 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 SPTLC2O15270 562 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 EN1Q05925 392 aaPredicted RBP8.77□□□□□ -1.01
SCN9A-201ENST00000303354 LRRC24Q50LG9 513 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 RABEP2Q9H5N1 569 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 ST7Q9NRC1 585 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 HMG20BQ9P0W2 317 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 URB2Q14146 1524 aaKnown RBP8.77□□□□□ -1.01
SCN9A-201ENST00000303354 SUPT20HQ8NEM7 779 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 MICAL1Q8TDZ2 1067 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 ALDH1L1O75891 902 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 GNAT2P19087 354 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 PPP1R7Q15435 360 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 KCTD1Q719H9 257 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 CAPN15O75808 1086 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 SLC4A1P02730 911 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 KANK3Q6NY19 840 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 KIF18AQ8NI77 898 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 SH2D4AQ9H788 454 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 ZSCAN23Q3MJ62 389 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 ERFEQ4G0M1 354 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 PHLDB2Q86SQ0 1253 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 IQCGQ9H095 443 aaKnown RBP8.77□□□□□ -1.01
SCN9A-201ENST00000303354 SUDS3Q9H7L9 328 aaPredicted RBP8.77□□□□□ -1.01
SCN9A-201ENST00000303354 PFDN4Q9NQP4 134 aa8.77□□□□□ -1.01
SCN9A-201ENST00000303354 EYA2O00167 538 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 PPEF1O14829 653 aaPredicted RBP8.76□□□□□ -1.01
SCN9A-201ENST00000303354 SLC16A2P36021 539 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 LRRC45Q96CN5 670 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 ABCC11Q96J66 1382 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 FLOT1O75955 427 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 MARK3P27448 753 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 ATP6V0A2Q9Y487 856 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 A0A1W2PP64 1363 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 ANKRD36BQ8N2N9 1353 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GNA11P29992 359 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 BTDP43251 543 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 TRIM31Q9BZY9 425 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 PRKAG2Q9UGJ0 569 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 POLIQ9UNA4 740 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 FLT4P35916 1363 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 SYCP2Q9BX26 1530 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 SHTN1A0MZ66 631 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GOLGA6CA6NDK9 693 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GOLGA6BA6NDN3 693 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GOLGA6DP0CG33 693 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 RUFY3Q7L099 469 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 GOLGA6AQ9NYA3 693 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 DNAI1Q9UI46 699 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 ANKRD44Q8N8A2 993 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 SEC31BQ9NQW1 1179 aa8.76□□□□□ -1.01
SCN9A-201ENST00000303354 DDX21Q9NR30 783 aaKnown RBP eCLIP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms