RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MCUR1Q96AQ8 359 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 UBXN1Q04323 297 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 VCXQ9H320 206 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 TUBBP07437 444 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 PNMA6EA0A0J9YXQ4 647 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 CDC5LQ99459 802 aaKnown RBP11.07□□□□□ -0.64
COL6A3-201ENST00000295550 TMEM2Q9UHN6 1383 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 LDHAL6AQ6ZMR3 332 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF365Q70YC5 407 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 KAT6AQ92794 2004 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 SH3BP5O60239 455 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF500O60304 480 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-201ENST00000295550 DCAF5Q96JK2 942 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 SAMM50Q9Y512 469 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 PCDH11XQ9BZA7 1347 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 PCDH11YQ9BZA8 1340 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 TNNC1P63316 161 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 GKAP1Q5VSY0 366 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-201ENST00000295550 RBM28Q9NW13 759 aaKnown RBP11.07□□□□□ -0.64
COL6A3-201ENST00000295550 APOBRQ0VD83 1088 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 RAB11FIP4Q86YS3 637 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF75DP51815 510 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 SIRT1Q96EB6 747 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 USP32Q8NFA0 1604 aa11.07□□□□□ -0.64
COL6A3-201ENST00000295550 HSPA1LP34931 641 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 KARSQ15046 597 aaKnown RBP11.06□□□□□ -0.64
COL6A3-201ENST00000295550 TM6SF1Q9BZW5 370 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 MAP2K2P36507 400 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 KIAA1524Q8TCG1 905 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 TXNDC16Q9P2K2 825 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 LMTK2Q8IWU2 1503 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 CRCPO75575 148 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 CCDC38Q502W7 563 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 LMBR1LQ6UX01 489 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 PHLDB2Q86SQ0 1253 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 ESR2Q92731 530 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 GBP5Q96PP8 586 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 ERCC6LQ2NKX8 1250 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 NDUFAB1O14561 156 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF569Q5MCW4 686 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 SLF2Q8IX21 1173 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 MAP2P11137 1827 aaKnown RBP11.06□□□□□ -0.64
COL6A3-201ENST00000295550 ARHGAP25P42331 645 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 SNX16P57768 344 aa11.06□□□□□ -0.64
COL6A3-201ENST00000295550 METTL22Q9BUU2 404 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-201ENST00000295550 CCDC152Q4G0S7 254 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 TNNI3KQ59H18 835 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 NAA16Q6N069 864 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 DDX27Q96GQ7 796 aaKnown RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 FPGT-TNNI3KV9GXZ4 949 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 GOLGA6CA6NDK9 693 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 GOLGA6DP0CG33 693 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 USP37Q86T82 979 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 GOLGA6AQ9NYA3 693 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 PPFIA3O75145 1194 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 GADD45BO75293 160 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 MARCKSP29966 332 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 ASIC1P78348 528 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF354CQ86Y25 554 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 NCKAP5LQ9HCH0 1330 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 STMN1P16949 149 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 TMCO4Q5TGY1 634 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 DDX21Q9NR30 783 aaKnown RBP eCLIP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 ERCC6L2Q5T890 1561 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 TCHPQ9BT92 498 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 LEO1Q8WVC0 666 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 PFDN4Q9NQP4 134 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 LMOD1P29536 600 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 TMEM63CQ9P1W3 806 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 PSMA7O14818 248 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 ZPR1O75312 459 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 CPA1P15085 419 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 NEK11Q8NG66 645 aa11.05□□□□□ -0.64
COL6A3-201ENST00000295550 JARID2Q92833 1246 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF131P52739 623 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 SSH3Q8TE77 659 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 ARHGEF2Q92974 986 aaKnown RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 CCDC42Q96M95 316 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 CRNKL1Q9BZJ0 848 aaKnown RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 SLC39A6Q13433 755 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 GPT2Q8TD30 523 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 ATP6V0A2Q9Y487 856 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 GPTP24298 496 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 PLCB3Q01970 1234 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 KAT14Q9H8E8 782 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 LRCH2Q5VUJ6 765 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 TSPYL2Q9H2G4 693 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 OSBPL3Q9H4L5 887 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 IFNKQ9P0W0 207 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 IQSEC2Q5JU85 1478 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 NLRP1Q9C000 1473 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 ALKQ9UM73 1620 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 TLDC2A0PJX2 215 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 IMPACTQ9P2X3 320 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 SLC9C2Q5TAH2 1124 aa11.04□□□□□ -0.64
COL6A3-201ENST00000295550 ZNF444Q8N0Y2 327 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 GPR161Q8N6U8 529 aaKnown RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 LRRC59Q96AG4 307 aaKnown RBP11.04□□□□□ -0.64
COL6A3-201ENST00000295550 SATB1Q01826 763 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms