RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 DICER1Q9UPY3 1922 aaKnown RBP19.71■□□□□ 0.75
CPSF4-201ENST00000292476 MCM5P33992 734 aa19.71■□□□□ 0.75
CPSF4-201ENST00000292476 TDO2P48775 406 aa19.71■□□□□ 0.75
CPSF4-201ENST00000292476 LCORLQ8N3X6 602 aa19.71■□□□□ 0.75
CPSF4-201ENST00000292476 MTMR6Q9Y217 621 aa19.71■□□□□ 0.75
CPSF4-201ENST00000292476 WDR19Q8NEZ3 1342 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 MAST2Q6P0Q8 1798 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 GSG1L2A8MUP6 293 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 BAG3O95817 575 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 CPA1P15085 419 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 PRDX5P30044 214 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 ME3Q16798 604 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 TTLL5Q6EMB2 1281 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 FBXL16Q8N461 479 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 MIGA1Q8NAN2 632 aa19.7■□□□□ 0.74
CPSF4-201ENST00000292476 RIOK1Q9BRS2 568 aaKnown RBP19.7■□□□□ 0.74
CPSF4-201ENST00000292476 RTFDC1Q9BY42 306 aaPredicted RBP19.7■□□□□ 0.74
CPSF4-201ENST00000292476 CRNKL1Q9BZJ0 848 aaKnown RBP19.7■□□□□ 0.74
CPSF4-201ENST00000292476 PODNQ7Z5L7 613 aa19.69■□□□□ 0.74
CPSF4-201ENST00000292476 GPR101Q96P66 508 aaPredicted RBP19.69■□□□□ 0.74
CPSF4-201ENST00000292476 CNNM2Q9H8M5 875 aa19.69■□□□□ 0.74
CPSF4-201ENST00000292476 TAF6LQ9Y6J9 622 aa19.69■□□□□ 0.74
CPSF4-201ENST00000292476 GADD45BO75293 160 aaPredicted RBP19.68■□□□□ 0.74
CPSF4-201ENST00000292476 ST3GAL1Q11201 340 aa19.68■□□□□ 0.74
CPSF4-201ENST00000292476 STOX1Q6ZVD7 989 aa19.68■□□□□ 0.74
CPSF4-201ENST00000292476 PSMD1Q99460 953 aa19.68■□□□□ 0.74
CPSF4-201ENST00000292476 RNF41Q9H4P4 317 aaPredicted RBP19.68■□□□□ 0.74
CPSF4-201ENST00000292476 GPBP1L1Q9HC44 474 aaPredicted RBP19.68■□□□□ 0.74
CPSF4-201ENST00000292476 CNPY2Q9Y2B0 182 aa19.68■□□□□ 0.74
CPSF4-201ENST00000292476 MSNP26038 577 aaKnown RBP19.68■□□□□ 0.74
CPSF4-201ENST00000292476 EXOSC10Q01780 885 aaKnown RBP19.68■□□□□ 0.74
CPSF4-201ENST00000292476 ATP8A2Q9NTI2 1148 aa19.68■□□□□ 0.74
CPSF4-201ENST00000292476 TPCN1Q9ULQ1 816 aa19.68■□□□□ 0.74
CPSF4-201ENST00000292476 NOL7Q9UMY1 257 aaKnown RBP19.68■□□□□ 0.74
CPSF4-201ENST00000292476 RIMBP2O15034 1052 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 IARSP41252 1262 aaKnown RBP19.67■□□□□ 0.74
CPSF4-201ENST00000292476 HAND2P61296 217 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 MFSD14BQ5SR56 506 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 Q6ZUG5 572 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 ADGRA1Q86SQ6 560 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 CCDC39Q9UFE4 941 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 TCHHQ07283 1943 aa19.67■□□□□ 0.74
CPSF4-201ENST00000292476 PCP11498 1178 aaKnown RBP19.66■□□□□ 0.74
CPSF4-201ENST00000292476 PLCG2P16885 1265 aa19.66■□□□□ 0.74
CPSF4-201ENST00000292476 TOB2Q14106 344 aaPredicted RBP19.66■□□□□ 0.74
CPSF4-201ENST00000292476 FAM163AQ96GL9 167 aaPredicted RBP19.66■□□□□ 0.74
CPSF4-201ENST00000292476 AGXT2Q9BYV1 514 aa19.66■□□□□ 0.74
CPSF4-201ENST00000292476 KRT23Q9C075 422 aa19.66■□□□□ 0.74
CPSF4-201ENST00000292476 GDPD2Q9HCC8 539 aa19.66■□□□□ 0.74
CPSF4-201ENST00000292476 EPB41L4AQ9HCS5 686 aaPredicted RBP19.66■□□□□ 0.74
CPSF4-201ENST00000292476 NT5C2P49902 561 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 PPP4CP60510 307 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 ZNF384Q8TF68 577 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 ANAPC4Q9UJX5 808 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 ELP1O95163 1332 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 GTF2IP78347 998 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 AKNAD1Q5T1N1 836 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 MFSD6Q6ZSS7 791 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 VPS33BQ9H267 617 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 AATFQ9NY61 560 aaKnown RBP eCLIP19.65■□□□□ 0.74
CPSF4-201ENST00000292476 JAG2Q9Y219 1238 aa19.65■□□□□ 0.74
CPSF4-201ENST00000292476 PRKAB2O43741 272 aa19.64■□□□□ 0.73
CPSF4-201ENST00000292476 ZNF500O60304 480 aaPredicted RBP19.64■□□□□ 0.73
CPSF4-201ENST00000292476 FKBP1AP62942 108 aaKnown RBP19.64■□□□□ 0.73
CPSF4-201ENST00000292476 STAG1Q8WVM7 1258 aa19.64■□□□□ 0.73
CPSF4-201ENST00000292476 LARP6Q9BRS8 491 aaKnown RBP19.64■□□□□ 0.73
CPSF4-201ENST00000292476 MTA3Q9BTC8 594 aa19.64■□□□□ 0.73
CPSF4-201ENST00000292476 MROH7-TTC4A0A0A0MT08 1334 aa19.64■□□□□ 0.73
CPSF4-201ENST00000292476 ZC3H4Q9UPT8 1303 aaKnown RBP19.64■□□□□ 0.73
CPSF4-201ENST00000292476 COL4A5P29400 1685 aa19.64■□□□□ 0.73
CPSF4-201ENST00000292476 SLC3A2P08195 630 aaKnown RBP19.63■□□□□ 0.73
CPSF4-201ENST00000292476 AMOTL1Q8IY63 956 aa19.63■□□□□ 0.73
CPSF4-201ENST00000292476 MB21D2Q8IYB1 491 aaPredicted RBP19.63■□□□□ 0.73
CPSF4-201ENST00000292476 ARPP21Q9UBL0 812 aaPredicted RBP19.63■□□□□ 0.73
CPSF4-201ENST00000292476 LAMA4Q16363 1823 aa19.63■□□□□ 0.73
CPSF4-201ENST00000292476 PPIP5K2O43314 1243 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 PRC1O43663 620 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 DYNLL1P63167 89 aaKnown RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 PPARAQ07869 468 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 AOC3Q16853 763 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 LARP1BQ659C4 914 aaKnown RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 LARGE2Q8N3Y3 721 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 BRF1Q92994 677 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 ZNF274Q96GC6 653 aaPredicted RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 TMEM87BQ96K49 555 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 TCEANC2Q96MN5 208 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 NMRK2Q9NPI5 230 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 KRT85P78386 507 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 FOXD4L6Q3SYB3 417 aaPredicted RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 FOXD4L3Q6VB84 417 aaPredicted RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 SDR42E1Q8WUS8 393 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 NAP1L5Q96NT1 182 aaPredicted RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.62■□□□□ 0.73
CPSF4-201ENST00000292476 ZKSCAN5Q9Y2L8 839 aa19.62■□□□□ 0.73
CPSF4-201ENST00000292476 GPR75-ASB3A0A0A6YYF3 556 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 VPS37CA5D8V6 355 aaPredicted RBP19.61■□□□□ 0.73
CPSF4-201ENST00000292476 GLTPD2A6NH11 291 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 FIBPO43427 364 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 EVCP57679 992 aa19.61■□□□□ 0.73
CPSF4-201ENST00000292476 KIAA2012Q0VF49 1180 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms