RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZNF202O95125 648 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 PTF1AQ7RTS3 328 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 AOPEPQ8N6M6 819 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 CDC5LQ99459 802 aaKnown RBP21.29■■□□□ 1
SHKBP1-201ENST00000291842 KRT23Q9C075 422 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 MINDY4BA8MYZ0 360 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 GUCY1A2P33402 732 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 LIFRP42702 1097 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 ANKRD18AQ8IVF6 992 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 CNNM2Q9H8M5 875 aa21.29■■□□□ 1
SHKBP1-201ENST00000291842 PFKFB1P16118 471 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 SLC39A14Q15043 492 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 FAM13BQ9NYF5 915 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 RTL9Q8NET4 1388 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 SSRP1Q08945 709 aaKnown RBP21.28■■□□□ 1
SHKBP1-201ENST00000291842 TRIM29Q14134 588 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 DPCR1Q3MIW9 517 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.28■■□□□ 1
SHKBP1-201ENST00000291842 CEP57L1Q8IYX8 460 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 STAG1Q8WVM7 1258 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 KIAA1468Q9P260 1216 aa21.28■■□□□ 1
SHKBP1-201ENST00000291842 PNPLA7Q6ZV29 1317 aa21.27■■□□□ 1
SHKBP1-201ENST00000291842 GNAT2P19087 354 aa21.27■■□□□ 1
SHKBP1-201ENST00000291842 GTF2E1P29083 439 aaPredicted RBP21.27■■□□□ 1
SHKBP1-201ENST00000291842 ISM2Q6H9L7 571 aa21.27■■□□□ 1
SHKBP1-201ENST00000291842 CCDC24Q8N4L8 307 aa21.27■■□□□ 1
SHKBP1-201ENST00000291842 SMARCC1Q92922 1105 aaPredicted RBP21.27■■□□□ 1
SHKBP1-201ENST00000291842 CHD4Q14839 1912 aa21.27■■□□□ 1
SHKBP1-201ENST00000291842 WTAPQ15007 396 aa21.26■□□□□ 0.99
SHKBP1-201ENST00000291842 ARID5BQ14865 1188 aa21.26■□□□□ 0.99
SHKBP1-201ENST00000291842 CLIC6Q96NY7 704 aa21.26■□□□□ 0.99
SHKBP1-201ENST00000291842 SLC3A2P08195 630 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 CMA1P23946 247 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 PPARAQ07869 468 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 ZRSR1Q15695 479 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 BARGINQ6ZT62 677 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 NUP133Q8WUM0 1156 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 CACTINQ8WUQ7 758 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 CELF1Q92879 486 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 KCNJ14Q9UNX9 436 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 BCL9LQ86UU0 1499 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 MAGEB6P1A0A0J9YX57 407 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 TBC1D9BQ66K14 1250 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 TSC1Q92574 1164 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 RREB1Q92766 1687 aa21.25■□□□□ 0.99
SHKBP1-201ENST00000291842 CYP2D7A0A087X1C5 515 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 FMNL1O95466 1100 aaPredicted RBP21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 DYNLL1P63167 89 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 SARM1Q6SZW1 724 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 MINPP1Q9UNW1 487 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 COL1A1P02452 1464 aaPredicted RBP21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 ERICH2A1L162 156 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 BTBD18B2RXH4 712 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 U2AF2P26368 475 aaKnown RBP eCLIP21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 SART3Q15020 963 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 PTPAQ15257 358 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 RTN1Q16799 776 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 SHC4Q6S5L8 630 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 CLEC4GQ6UXB4 293 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 MAP3K14Q99558 947 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 NAT10Q9H0A0 1025 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 ECM29Q5VYK3 1845 aa21.24■□□□□ 0.99
SHKBP1-201ENST00000291842 RRP9O43818 475 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 KLRK1P26718 216 aa21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 IFNAR1P17181 557 aa21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 GNL3LQ9NVN8 582 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 BSDC1Q9NW68 430 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 SRP68Q9UHB9 627 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 ZNF804BA4D1E1 1349 aa21.23■□□□□ 0.99
SHKBP1-201ENST00000291842 SYKP43405 635 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 CAVIN4Q5BKX8 364 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 FILIP1Q7Z7B0 1213 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 MYRIPQ8NFW9 859 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 CDC25BP30305 580 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 SF3B3Q15393 1217 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 SPECC1Q5M775 1068 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 MRFAP1L1Q96HT8 127 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 FAM84BQ96KN1 310 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 UBAC1Q9BSL1 405 aa21.22■□□□□ 0.99
SHKBP1-201ENST00000291842 BCORQ6W2J9 1755 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 DYNC1I1O14576 645 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 PRDM1O75626 825 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 UBE4AQ14139 1066 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 ZNF654Q8IZM8 581 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 TIAM2Q8IVF5 1701 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 ZNF384Q8TF68 577 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 RIOK1Q9BRS2 568 aaKnown RBP21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 RNF41Q9H4P4 317 aaPredicted RBP21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 BCL2L12Q9HB09 334 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 LAMB2P55268 1798 aa21.21■□□□□ 0.99
SHKBP1-201ENST00000291842 STK36Q9NRP7 1315 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 PPP6R2O75170 966 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 FAM182BQ5T319 152 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 NBPF11Q86T75 865 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 NOSTRINQ8IVI9 506 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 DIS3L2Q8IYB7 885 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 TRIM22Q8IYM9 498 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 FANCBQ8NB91 859 aa21.2■□□□□ 0.98
SHKBP1-201ENST00000291842 PRIMPOLQ96LW4 560 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms